RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 THSD1Q9NS62 852 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 MARK1Q9P0L2 795 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 CACNA1EQ15878 2313 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ZNF236Q9UL36 1845 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 H0YGG7 62 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 EDNRAP25101 427 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ARF3P61204 181 aaPredicted RBP13.88□□□□□ -0.19
CUX1-215ENST00000556210 ILKQ13418 452 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 GPR18Q14330 331 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 BAK1Q16611 211 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ALG10BQ5I7T1 473 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 MRPL2Q5T653 305 aaKnown RBP13.88□□□□□ -0.19
CUX1-215ENST00000556210 MEDAGQ5VYS4 303 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 LINGO2Q7L985 606 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 SERPINA12Q8IW75 414 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 OR52I1Q8NGK6 324 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 CREB3L4Q8TEY5 395 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 NDC1Q9BTX1 674 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 OR52D1Q9H346 318 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ACTR10Q9NZ32 417 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ZSWIM8A7E2V4 1837 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 LRRN3E7EW58 273 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 TNFRSF10AO00220 468 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 HRO43593 1189 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 TNFP01375 233 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 REEP5Q00765 189 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 TFF2Q03403 129 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 FAM160A2Q8N612 972 aaPredicted RBP13.88□□□□□ -0.19
CUX1-215ENST00000556210 SLC7A6Q92536 515 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 NKD1Q969G9 470 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 DHRS1Q96LJ7 313 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 LRRN3Q9H3W5 708 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 TXNL4BQ9NX01 149 aaKnown RBP13.88□□□□□ -0.19
CUX1-215ENST00000556210 TAS2R7Q9NYW3 318 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 LIPT1Q9Y234 373 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 NEUROG3Q9Y4Z2 214 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 SCN5AQ14524 2016 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 UNC119BA6NIH7 251 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 PRODHO43272 600 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 KHDRBS3O75525 346 aaKnown RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 CSTAP01040 98 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 NDUFS1P28331 727 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 OPRD1P41143 372 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 HHEXQ03014 270 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 SHHQ15465 462 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 XKRXQ6PP77 449 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 RPTNQ6XPR3 784 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 PITX2Q99697 317 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ENAMQ9NRM1 1142 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ICKQ9UPZ9 632 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 VWA8A3KMH1 1905 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ELOA3DA6NLF2 546 aaPredicted RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 TSPAN4O14817 238 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 SLC25A12O75746 678 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 SOD1P00441 154 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 RLN1P04808 185 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ZNF3P17036 446 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 DRD5P21918 477 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 PRPH2P23942 346 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 DRD3P35462 400 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 DUSP5Q16690 384 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ELOA3BQ3SY89 546 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 EIPR1Q53HC9 387 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 PRSS41Q7RTY9 318 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 GJD3Q8N144 294 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 GDPD1Q8N9F7 314 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ELOA3Q8NG57 546 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 OR7G2Q8NG99 324 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ZNF431Q8TF32 576 aaPredicted RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 DGAT2Q96PD7 388 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 KCNN2Q9H2S1 579 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 MTHFD2LQ9H903 347 aaPredicted RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 QPCTLQ9NXS2 382 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 POLR1DQ9Y2S0 133 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 RALGAPA2Q2PPJ7 1873 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 PRAMEF25A6NGN4 478 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 SMLR1H3BR10 107 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 MEN1O00255 615 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 RCBTB2O95199 551 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 PLGP00747 810 aaPredicted RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 ATF4P18848 351 aaPredicted RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 IGFALSP35858 605 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 OR12D2P58182 307 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 MLF2Q15773 248 aaPredicted RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 NDUFAF6Q330K2 333 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 WDR45BQ5MNZ6 344 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 AGBL4Q5VU57 503 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 SAXO2Q658L1 398 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 JAZF1Q86VZ6 243 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ZFYVE21Q9BQ24 234 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 EPHX3Q9H6B9 360 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 GDE1Q9NZC3 331 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 CNOT2Q9NZN8 540 aaKnown RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 ATXN7L1Q9ULK2 861 aaPredicted RBP13.87□□□□□ -0.19
CUX1-215ENST00000556210 ZAR1LA6NP61 321 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 ABATP80404 500 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 IFITM2Q01629 132 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 CHMP1BQ7LBR1 199 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 GLCCI1Q86VQ1 547 aa13.87□□□□□ -0.19
CUX1-215ENST00000556210 GPR135Q8IZ08 494 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms