RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 DEFB110Q30KQ9 67 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 FGD3Q5JSP0 725 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 ZNF367Q7RTV3 350 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 C6orf120Q7Z4R8 191 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 MRGPRGQ86SM5 289 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 CDH24Q86UP0 819 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 FAM20CQ8IXL6 584 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 ENTHD1Q8IYW4 607 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 GPR135Q8IZ08 494 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 LINC01555Q8NAE3 123 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 MFSD9Q8NBP5 474 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 KBTBD8Q8NFY9 601 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 OR2L3Q8NG85 312 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 OR10Q1Q8NGQ4 319 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 OR2A1Q8NGT9 310 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 FNDC8Q8TC99 324 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 TRUB1Q8WWH5 349 aaKnown RBP10.3□□□□□ -0.76
SHMT2-216ENST00000554975 EXOSC8Q96B26 276 aaKnown RBP10.3□□□□□ -0.76
SHMT2-216ENST00000554975 TMEM19Q96HH6 336 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 DHRS1Q96LJ7 313 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 ZNF354BQ96LW1 612 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 FER1L6-AS2Q96M78 137 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 Q96MT0 163 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 PRAP1Q96NZ9 151 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 COL21A1Q96P44 957 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 OR2A14Q96R47 310 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 SIGLEC11Q96RL6 698 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 FEVQ99581 238 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 COPS4Q9BT78 406 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 ITPAQ9BY32 194 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 C3orf14Q9HBI5 128 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 BCL2L10Q9HD36 194 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 ACOT13Q9NPJ3 140 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 SLC35C2Q9NQQ7 365 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 SIRT3Q9NTG7 399 aaPredicted RBP10.3□□□□□ -0.76
SHMT2-216ENST00000554975 ZCCHC3Q9NUD5 404 aaKnown RBP10.3□□□□□ -0.76
SHMT2-216ENST00000554975 SERTAD3Q9UJW9 196 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 SLC13A4Q9UKG4 626 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 ERVK-11Q9UQG0 969 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 LIPT1Q9Y234 373 aa10.3□□□□□ -0.76
SHMT2-216ENST00000554975 IRGMA1A4Y4 181 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 LRIT2A6NDA9 550 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 SYT5O00445 386 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 ERI3O43414 337 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 TMPRSS11DO60235 418 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 GCM2O75603 506 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 SLITRK5O94991 958 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 FADS2O95864 444 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 H1F0P07305 194 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 IFI6P09912 130 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 SLC35G6P0C7Q6 338 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 MAGP20916 626 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 MATN1P21941 496 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 HIST1H1TP22492 207 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 PSMB5P28074 263 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 PEBP1P30086 187 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 POLR2IP36954 125 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 IFNGR2P38484 337 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 BUD31P41223 144 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 GP2P55259 537 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 SOX8P57073 446 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 TUBA1BP68363 451 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 EMX1Q04741 257 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 SSPNQ14714 243 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 ZNF169Q14929 603 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 TOR1AIP1Q5JTV8 583 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 DCST1Q5T197 706 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 NDUFAF5Q5TEU4 345 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 MEDAGQ5VYS4 303 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 LAIR2Q6ISS4 152 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 IGFL2Q6UWQ7 119 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 AHSA2Q719I0 299 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 TUBA1AQ71U36 451 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 DNAJC22Q8N4W6 341 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 SLC5A8Q8N695 610 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 HORMAD2Q8N7B1 307 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 MINDY2Q8NBR6 621 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 CREB3L4Q8TEY5 395 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 TM9SF4Q92544 642 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 YIPF6Q96EC8 236 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 ALPK1Q96QP1 1244 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 C17orf62Q9BQA9 187 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 DPH7Q9BTV6 452 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 ANKRD19PQ9H560 264 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 LIN28AQ9H9Z2 209 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 PAK1IP1Q9NWT1 392 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 CLN6Q9NWW5 311 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 PSORS1C1Q9UIG5 152 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 ACAD8Q9UKU7 415 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 RNF6Q9Y252 685 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 KLHL20Q9Y2M5 609 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 PTRH2Q9Y3E5 179 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 GPC6Q9Y625 555 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 A3GALT2U3KPV4 340 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 CPAMD8Q8IZJ3 1885 aa10.29□□□□□ -0.76
SHMT2-216ENST00000554975 INTS1Q8N201 2190 aaKnown RBP10.29□□□□□ -0.76
SHMT2-216ENST00000554975 ABCA4P78363 2273 aa10.28□□□□□ -0.76
SHMT2-216ENST00000554975 OR2A25A4D2G3 310 aa10.28□□□□□ -0.76
SHMT2-216ENST00000554975 CLCA1A8K7I4 914 aa10.28□□□□□ -0.76
SHMT2-216ENST00000554975 TMEM229AB2RXF0 380 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms