RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 KLHL12Q53G59 568 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 TRMT12Q53H54 448 aaKnown RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 YIF1BQ5BJH7 314 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF57Q68EA5 555 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 VITQ6UXI7 678 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ASB18Q6ZVZ8 466 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 CADM2Q8N3J6 435 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 TTLQ8NG68 377 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 OR2T33Q8NG76 320 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 GANCQ8TET4 914 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 OSTF1Q92882 214 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 HLA-CQ95604 372 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 RFKQ969G6 155 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 KIAA1143Q96AT1 154 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 C10orf90Q96M02 699 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PRSS27Q9BQR3 290 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 OR52D1Q9H346 318 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 MCUBQ9NWR8 336 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PTGFRNQ9P2B2 879 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 EXTL2Q9UBQ6 330 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 FBXL4Q9UKA2 621 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 EXOGQ9Y2C4 368 aaKnown RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 WDR45Q9Y484 360 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 LINC01553A4QN01 128 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 J3QRE1 110 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ERVH48-1M5A8F1 160 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PEX12O00623 359 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 P2RX6O15547 441 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 RNF13O43567 381 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 HCN1O60741 890 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 NOS3P29474 1203 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PRKAR1BP31321 381 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 IGFALSP35858 605 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 STAT5AP42229 794 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 SLC16A1P53985 500 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 SEC13P55735 322 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 GPLD1P80108 840 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 DEFB134Q4QY38 66 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF425Q6IV72 752 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 HEPHL1Q6MZM0 1159 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 MFSD12Q6NUT3 480 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 RPTNQ6XPR3 784 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 THSD4Q6ZMP0 1018 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 TRILQ7L0X0 811 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 NRROSQ86YC3 692 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PEX5LQ8IYB4 626 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 CCL4L1Q8NHW4 92 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 SMARCD2Q92925 531 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ALG8Q9BVK2 526 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PLA2G2FQ9BZM2 168 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 FGF22Q9HCT0 170 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 PHPT1Q9NRX4 125 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 ACOXLQ9NUZ1 547 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 KLHL28Q9NXS3 571 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 H2AFY2Q9P0M6 372 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-213ENST00000552720 KCNE5Q9UJ90 142 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 CA5BQ9Y2D0 317 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 CDH10Q9Y6N8 788 aa6.98□□□□□ -1.29
LIMA1-213ENST00000552720 CFAP54Q96N23 3096 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CEP290O15078 2479 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 A0A1W2PQU0 124 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 SLC31A1O15431 190 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 MAGEB4O15481 346 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 LDB3O75112 727 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 GYPBP06028 91 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 EIF4EP06730 217 aaKnown RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 PRKAR1AP10644 381 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 IL9P15248 144 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 HLA-DMAP28067 261 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 SRP9P49458 86 aaKnown RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CLDN20P56880 219 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 E2F1Q01094 437 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 FAPQ12884 760 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 PDGFRLQ15198 375 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CEBPEQ15744 281 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 RNASE12Q5GAN4 147 aaKnown RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 NIPAL3Q6P499 406 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 ARL9Q6T311 187 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 MTSS1LQ765P7 747 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 PRSS41Q7RTY9 318 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 RD3Q7Z3Z2 195 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 GHDCQ8N2G8 530 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 RFLNBQ8N5W9 214 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 DNAJC5GQ8N7S2 189 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CYB561A3Q8NBI2 242 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 MFSD9Q8NBP5 474 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 DUSP18Q8NEJ0 188 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 OR4M1Q8NGD0 313 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 OR13C5Q8NGS8 318 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 OR52N1Q8NH53 320 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 BADQ92934 168 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 KISS1RQ969F8 398 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 MOAP1Q96BY2 351 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 KCNJ15Q99712 375 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 MKRN2Q9H000 416 aaKnown RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 OR51V1Q9H2C8 321 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CCDC86Q9H6F5 360 aaKnown RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 RMI1Q9H9A7 625 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CERS4Q9HA82 394 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 ADAP2Q9NPF8 381 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms