RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SSTR2P30874 369 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 ATP6V1E1P36543 226 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 MC3RP41968 323 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 STAT5AP42229 794 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 RFX3P48380 749 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 MTNR1BP49286 362 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 RNF144AP50876 292 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-212ENST00000552491 ANXA11P50995 505 aaKnown RBP5.05□□□□□ -1.6
LIMA1-212ENST00000552491 CCR6P51684 374 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 PDX1P52945 283 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 DGCR2P98153 550 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 BDH1Q02338 343 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 IKZF1Q13422 519 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 AGERQ15109 404 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 LTB4RQ15722 352 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 LGALSLQ3ZCW2 172 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-212ENST00000552491 FAM46CQ5VWP2 391 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 SFXN4Q6P4A7 337 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 ARL9Q6T311 187 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 LYPD4Q6UWN0 246 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 WDR88Q6ZMY6 472 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 IDO2Q6ZQW0 420 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 RRM2BQ7LG56 351 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 KRT74Q7RTS7 529 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 DGLUCYQ7Z3D6 616 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 ADCK2Q7Z695 626 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 LRRC28Q86X40 367 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-212ENST00000552491 GJD3Q8N144 294 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 OR8H3Q8N146 312 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 LRRC17Q8N6Y2 441 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 OR5K2Q8NHB8 316 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 PIGXQ8TBF5 258 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 OSTF1Q92882 214 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 KISS1RQ969F8 398 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-212ENST00000552491 NXPE3Q969Y0 559 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 BBS4Q96RK4 519 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 SMAD5Q99717 465 aaKnown RBP5.05□□□□□ -1.6
LIMA1-212ENST00000552491 ORAI3Q9BRQ5 295 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 ALG8Q9BVK2 526 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 JAM3Q9BX67 310 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 TEX12Q9BXU0 123 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 MED28Q9H204 178 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 KCNN2Q9H2S1 579 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 UBQLN3Q9H347 655 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 UCKL1Q9NWZ5 548 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 BABAM2Q9NXR7 383 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 KCNN3Q9UGI6 736 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 ADAM29Q9UKF5 820 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 GPR34Q9UPC5 381 aa5.05□□□□□ -1.6
LIMA1-212ENST00000552491 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TEX13CA0A0J9YWL9 993 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TEX51A0A1B0GUA7 166 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 A0A1W2PPK0 400 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 B8ZZF3 427 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SYT5O00445 386 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 LZTS3O60299 673 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SOX30O94993 753 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 AIFM1O95831 613 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PDGFAP04085 211 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TCRBP04435 133 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TPOP07202 933 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CISD3P0C7P0 127 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CLUP10909 449 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 DRD2P14416 443 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NPR2P20594 1047 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 GIFP27352 417 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TALDO1P37837 337 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 BCL6P41182 706 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 GCGRP47871 477 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PITPNBP48739 271 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ZP1P60852 638 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 TRA2BP62995 288 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ST3GAL3Q11203 375 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CAMK2DQ13557 499 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF77Q15935 545 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ST3GAL2Q16842 350 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CDONQ4KMG0 1287 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRAMEF8Q5VWM4 474 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 PRAMEF7Q5VXH5 474 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 FCRLBQ6BAA4 426 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 NIPAL3Q6P499 406 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 BHLHB9Q6PI77 547 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 CXXC5Q7LFL8 322 aaKnown RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 AMZ2Q86W34 360 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SIAH3Q8IW03 269 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SHISA5Q8N114 240 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 FBXL6Q8N531 539 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 RFLNBQ8N5W9 214 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SPERTQ8NA61 448 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 KREMEN2Q8NCW0 462 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 OR9A2Q8NGT5 310 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ACOT11Q8WXI4 607 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 KAT2AQ92830 837 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 YIPF5Q969M3 257 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 GIMAP5Q96F15 307 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SLC41A3Q96GZ6 507 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 SORCS2Q96PQ0 1159 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 DPCDQ9BVM2 203 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-212ENST00000552491 ZBP1Q9H171 429 aa5.04□□□□□ -1.6
LIMA1-212ENST00000552491 OR51J1Q9H342 316 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms