RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZNF217O75362 1048 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 CD6P30203 668 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 NUP62P37198 522 aaPredicted RBP14.03□□□□□ -0.16
CUX1-214ENST00000550008 GPR143P51810 404 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 TRA2BP62995 288 aaKnown RBP14.03□□□□□ -0.16
CUX1-214ENST00000550008 MRPS21P82921 87 aaKnown RBP14.03□□□□□ -0.16
CUX1-214ENST00000550008 TNFRSF17Q02223 184 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 TBCEQ15813 527 aaPredicted RBP14.03□□□□□ -0.16
CUX1-214ENST00000550008 ADPRMQ3LIE5 342 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 FAM69BQ5VUD6 431 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 CARD17Q5XLA6 110 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 C1orf94Q6P1W5 598 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 LRFN4Q6PJG9 635 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 LAS2Q8IYD9 372 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 NEK7Q8TDX7 302 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 ACER3Q9NUN7 267 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 COMMD9Q9P000 198 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 FTSJ1Q9UET6 329 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 PSORS1C1Q9UIG5 152 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 CKAP5Q14008 2032 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 LOC105369274A0A096LPK9 316 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 LOC102723532A0A0G2JNH3 316 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 HYKKA2RU49 373 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 H3BML4 177 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 PRAMEF2O60811 474 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 TRAPPC6AO75865 159 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 HOXB3P14651 431 aaPredicted RBP14.03□□□□□ -0.16
CUX1-214ENST00000550008 TNFRSF4P43489 277 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 ZNF547Q8IVP9 402 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 OR4N4Q8N0Y3 316 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 C10orf111Q8N326 155 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 TMEM255BQ8WV15 326 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 MRGPRX1Q96LB2 322 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 NLKQ9UBE8 527 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 SCN3AQ9NY46 2000 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 ARID2Q68CP9 1835 aa14.03□□□□□ -0.16
CUX1-214ENST00000550008 PRAMEF4O60810 478 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 CEACAM5P06731 702 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 MMP11P24347 488 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 FAUP35544 74 aaKnown RBP14.02□□□□□ -0.16
CUX1-214ENST00000550008 SQSTM1Q13501 440 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 PRAMEF9Q5VWM5 478 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 PLEKHG7Q6ZR37 379 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 PLXDC1Q8IUK5 500 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 OR6N1Q8NGY5 312 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 OR2AJ1Q8NGZ0 328 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 RHOXF1Q8NHV9 184 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 TANKQ92844 425 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 TMEM38AQ9H6F2 299 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 SERINC1Q9NRX5 453 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 C1GALT1Q9NS00 363 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 THSD1Q9NS62 852 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 NCOR1O75376 2440 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 CASP8AP2Q9UKL3 1982 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 HMGN4O00479 90 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 AK1P00568 194 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 RORAP35398 523 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 TBRG1Q3YBR2 411 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 NKAIN4Q8IVV8 208 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 IL17RCQ8NAC3 791 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 THAP4Q8WY91 577 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 DEFB126Q9BYW3 111 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 NRSN2Q9GZP1 204 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 KIR3DX1Q9H7L2 352 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 ADAM29Q9UKF5 820 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 CDH10Q9Y6N8 788 aa14.02□□□□□ -0.16
CUX1-214ENST00000550008 SCN10AQ9Y5Y9 1956 aa14.02□□□□□ -0.17
CUX1-214ENST00000550008 POLR1CO15160 346 aaPredicted RBP14.02□□□□□ -0.17
CUX1-214ENST00000550008 APBB3O95704 486 aa14.02□□□□□ -0.17
CUX1-214ENST00000550008 CHAF1BQ13112 559 aa14.02□□□□□ -0.17
CUX1-214ENST00000550008 HSD17B12Q53GQ0 312 aa14.02□□□□□ -0.17
CUX1-214ENST00000550008 SDR16C5Q8N3Y7 309 aa14.02□□□□□ -0.17
CUX1-214ENST00000550008 SLC37A3Q8NCC5 494 aa14.02□□□□□ -0.17
CUX1-214ENST00000550008 ZNF559Q9BR84 538 aa14.02□□□□□ -0.17
CUX1-214ENST00000550008 PITHD1Q9GZP4 211 aaPredicted RBP14.02□□□□□ -0.17
CUX1-214ENST00000550008 CISD3P0C7P0 127 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 RAB15P59190 212 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 TMPRSS12Q86WS5 348 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 ABCG5Q9H222 651 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 EP300Q09472 2414 aaPredicted RBP14.01□□□□□ -0.17
CUX1-214ENST00000550008 C1QCP02747 245 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 TSPAN5P62079 268 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUSP5Q16690 384 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 TMEM225Q6GV28 225 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DCDC5Q6ZRR9 648 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 ZNF101Q8IZC7 436 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUS3LQ96G46 650 aaKnown RBP14.01□□□□□ -0.17
CUX1-214ENST00000550008 FUZQ9BT04 418 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 PLCL2Q9UPR0 1127 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 SESN1Q9Y6P5 492 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 A0A1B0GW55 424 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 PDCD5O14737 125 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 TLX3O43711 291 aaPredicted RBP14.01□□□□□ -0.17
CUX1-214ENST00000550008 NDUFB2O95178 105 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUX4L2P0CJ85 424 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUX4L3P0CJ86 424 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUX4L4P0CJ87 422 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUX4L5P0CJ88 424 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUX4L6P0CJ89 424 aa14.01□□□□□ -0.17
CUX1-214ENST00000550008 DUX4L7P0CJ90 424 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms