RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	FAM83F	Q8NEG4	500 aa	Predicted RBP	6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	OR6Y1	Q8NGX8	325 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	HOXB13	Q92826	284 aa	Predicted RBP	6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	PPCDC	Q96CD2	204 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	MTERF3	Q96E29	417 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	ELP4	Q96EB1	424 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	C14orf79	Q96F83	325 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	ZBED6CL	Q96FA7	236 aa	Predicted RBP	6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	EGLN2	Q96KS0	407 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	PPP3R2	Q96LZ3	170 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	MS4A4E	Q96PG1	132 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	ADO	Q96SZ5	270 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	LMF2	Q9BU23	707 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	PARD6B	Q9BYG5	372 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	OR2B2	Q9GZK3	357 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	REEP4	Q9H6H4	257 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	GALNT9	Q9HCQ5	603 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440		Q9N2J8	555 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	KCNJ16	Q9NPI9	418 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	ASH2L	Q9UBL3	628 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440		Q9UFV3	132 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	ABCG2	Q9UNQ0	655 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	OR10H1	Q9Y4A9	318 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	DCHS2	Q6V1P9	2916 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	CSMD2	Q7Z408	3487 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	CSMD1	Q96PZ7	3565 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	LRBA	P50851	2863 aa		6.98	□□□□□ -1.29
SNHG1-223	ENST00000545440	FBN2	P35556	2912 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	NKX2-6	A6NCS4	301 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	HSPB2	A8KAH6	182 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	PIP5K1B	O14986	540 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	TM9SF1	O15321	606 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	RGS16	O15492	202 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	NME6	O75414	186 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	CBR3	O75828	277 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	SNUPN	O95149	360 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	BPGM	P07738	259 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	LINC00032	P0C843	101 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	BMP7	P18075	431 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	SRD5A2	P31213	254 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	ARRB2	P32121	409 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	TIMP3	P35625	211 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	HPCAL1	P37235	193 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	RPL3	P39023	403 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	MECP2	P51608	486 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	GAS1	P54826	345 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	PSMD4	P55036	377 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	HSPB3	Q12988	150 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	TOMM20	Q15388	145 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	HSPB2	Q16082	182 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	DECR1	Q16698	335 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	GALNTL6	Q49A17	601 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	ATP6AP1L	Q52LC2	224 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	EIPR1	Q53HC9	387 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	DCST1	Q5T197	706 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	LRIG3	Q6UXM1	1119 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	MEX3B	Q6ZN04	569 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	CBLL1	Q75N03	491 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	R3HCC1L	Q7Z5L2	792 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	CROCCP2	Q86T23	111 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	IFNE	Q86WN2	208 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	PLCZ1	Q86YW0	608 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	CCDC71	Q8IV32	467 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	SLC44A2	Q8IWA5	706 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	WDSUB1	Q8N9V3	476 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	OR10Q1	Q8NGQ4	319 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	AGR3	Q8TD06	166 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	GFM2	Q969S9	779 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	CIDEC	Q96AQ7	238 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	EFHD2	Q96C19	240 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	ZIM3	Q96PE6	472 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	TSSK3	Q96PN8	268 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	TIMP4	Q99727	224 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	UGT2B28	Q9BY64	529 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	C3orf14	Q9HBI5	128 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	SMURF1	Q9HCE7	757 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	SERHL	Q9NQF3	203 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	ACSS1	Q9NUB1	689 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	FAM120C	Q9NX05	1096 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	NTM	Q9P121	344 aa		6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	MRTO4	Q9UKD2	239 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	MRPS18C	Q9Y3D5	142 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-223	ENST00000545440	MED13L	Q71F56	2210 aa		6.96	□□□□□ -1.29
SNHG1-223	ENST00000545440	ABCA4	P78363	2273 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	MBD3L4	A6NDZ8	208 aa	Predicted RBP	6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	MBD3L3	A6NE82	208 aa	Predicted RBP	6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	MBD3L5	A6NJ08	208 aa	Predicted RBP	6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	CD8B2	A6NJW9	211 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	ENO4	A6NNW6	628 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	SCAMP2	O15127	329 aa	Known RBP	6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	BIRC5	O15392	142 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	LYPLA1	O75608	230 aa	Predicted RBP	6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	IL33	O95760	270 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	EPPIN	O95925	133 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	AMY2A	P04746	511 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	DHRS4L1	P0CG22	281 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	BCKDHA	P12694	445 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	CYP4B1	P13584	511 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	CPN1	P15169	458 aa		6.96	□□□□□ -1.3
SNHG1-223	ENST00000545440	CREB1	P16220	341 aa		6.96	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 28 ms