RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	A4GNT	Q9UNA3	340 aa		14	□□□□□ -0.17
CHFR-223	ENST00000544268	ATG4B	Q9Y4P1	393 aa		14	□□□□□ -0.17
CHFR-223	ENST00000544268	TRAV6	A0A075B6T7	132 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	SPTY2D1-AS1	A0A0U1RR47	76 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	LRIT2	A6NDA9	550 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	FH	P07954	510 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	CHRM4	P08173	479 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	KCNJ5	P48544	419 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	NCBP2	P52298	156 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	RAB8A	P61006	207 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	DCST1	Q5T197	706 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	LCN1P1	Q5VSP4	162 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	PODNL1	Q6PEZ8	512 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	DBX2	Q6ZNG2	339 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	COMMD7	Q86VX2	200 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	NUDT13	Q86X67	352 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	UBE2J2	Q8N2K1	259 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	KIAA1143	Q96AT1	154 aa	Predicted RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	AMDHD1	Q96NU7	426 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	OPALIN	Q96PE5	141 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	ZCCHC3	Q9NUD5	404 aa	Known RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	MCUB	Q9NWR8	336 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	TVP23B	Q9NYZ1	205 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	AHSP	Q9NZD4	102 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	ZNF624	Q9P2J8	865 aa	Predicted RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	FBXW2	Q9UKT8	454 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268		A6NCN8	305 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	PRKY	O43930	277 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	H1F0	P07305	194 aa	Known RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	NR2F1	P10589	423 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	MAP2K3	P46734	347 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	RNF144A	P50876	292 aa	Predicted RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	GPR85	P60893	370 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	MAP4K2	Q12851	820 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	FZD2	Q14332	565 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	PLAG1	Q6DJT9	500 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	OR4C11	Q6IEV9	310 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	GPAT4	Q86UL3	456 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	SLC34A3	Q8N130	599 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	PPIL3	Q9H2H8	161 aa	Known RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	HHATL	Q9HCP6	504 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	EXOSC4	Q9NPD3	245 aa	Known RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	GPR27	Q9NS67	375 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	SNTG1	Q9NSN8	517 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	MAN2C1	Q9NTJ4	1040 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	PCOLCE2	Q9UKZ9	415 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	NTNG1	Q9Y2I2	539 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	SIT1	Q9Y3P8	196 aa		13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	MDC1	Q14676	2089 aa	Known RBP	13.99	□□□□□ -0.17
CHFR-223	ENST00000544268	TDRD6	O60522	2096 aa	Known RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268		A0A0A6YYD5	115 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268		A0A1W2PR48	441 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ERI3	O43414	337 aa	Known RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	OSM	P13725	252 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	MAOB	P27338	520 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	XK	P51811	444 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ELOA	Q14241	798 aa	Known RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	LARS2	Q15031	903 aa	Known RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	GRK1	Q15835	563 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	MZT2B	Q6NZ67	158 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	TMEM107	Q6UX40	140 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	C16orf62	Q7Z3J2	963 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ZER1	Q7Z7L7	766 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	RAB42	Q8N4Z0	105 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	FAM46D	Q8NEK8	389 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	KLHL6	Q8WZ60	621 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	RGMA	Q96B86	450 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ARSG	Q96EG1	525 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	CNRIP1	Q96F85	164 aa	Predicted RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ZNF354B	Q96LW1	612 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	QRFPR	Q96P65	431 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	MAPKAP1	Q9BPZ7	522 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	PLA2G12A	Q9BZM1	189 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	POLR2J3	Q9H1A7	115 aa	Known RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ABCB9	Q9NP78	766 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	SLC6A20	Q9NP91	592 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	RBFOX1	Q9NWB1	397 aa	Known RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	CLN6	Q9NWW5	311 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	GPR55	Q9Y2T6	319 aa	Predicted RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	HEBP2	Q9Y5Z4	205 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	SDK1	Q7Z5N4	2213 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	METTL12	A8MUP2	240 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	CS	O75390	466 aa	Known RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	TNF	P01375	233 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	CELA2B	P08218	269 aa	Predicted RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	HBQ1	P09105	142 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	TSPAN19	P0C672	248 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	MMP11	P24347	488 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	CERS1	P27544	350 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	FRK	P42685	505 aa	Predicted RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	BLVRA	P53004	296 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ILF3	Q12906	894 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	PYDC2	Q56P42	97 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ACSM5	Q6NUN0	579 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ZNF704	Q6ZNC4	412 aa	Predicted RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	SHF	Q7M4L6	423 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	ADGRG3	Q86Y34	549 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	OR2L8	Q8NGY9	312 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	SUN3	Q8TAQ9	357 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	AKAP1	Q92667	903 aa	Known RBP eCLIP	13.98	□□□□□ -0.17	4e-6	■■■■□ 21.3

Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms