RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	SDC1	P18827	310 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	SOX6	P35712	828 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	SULT1E1	P49888	294 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	HNRNPF	P52597	415 aa	Known RBP	4	□□□□□ -1.77
YBX3-210	ENST00000540975	ARFIP1	P53367	373 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	GNB2	P62879	340 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	BASP1	P80723	227 aa	Known RBP	4	□□□□□ -1.77
YBX3-210	ENST00000540975	UBXN1	Q04323	297 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	RAB35	Q15286	201 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	STK11	Q15831	433 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	HFE	Q30201	348 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	DCAF4L1	Q3SXM0	396 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	SCARA5	Q6ZMJ2	495 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	MOB1B	Q7L9L4	216 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	GPBP1	Q86WP2	473 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	UNC45B	Q8IWX7	931 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	ZNF397	Q8NF99	534 aa	Predicted RBP	4	□□□□□ -1.77
YBX3-210	ENST00000540975	SETD7	Q8WTS6	366 aa	Known RBP	4	□□□□□ -1.77
YBX3-210	ENST00000540975	SHC3	Q92529	594 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	SLC35B4	Q969S0	331 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	EEF2KMT	Q96G04	330 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	IMMP1L	Q96LU5	166 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	NDUFAF3	Q9BU61	184 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	CARD9	Q9H257	536 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	EHD1	Q9H4M9	534 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	HOMER3	Q9NSC5	361 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	CAB39	Q9Y376	341 aa	Predicted RBP	4	□□□□□ -1.77
YBX3-210	ENST00000540975	FKBP7	Q9Y680	259 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	BLM	P54132	1417 aa	Predicted RBP	4	□□□□□ -1.77
YBX3-210	ENST00000540975	DNMBP	Q6XZF7	1577 aa		4	□□□□□ -1.77
YBX3-210	ENST00000540975	TCOF1	Q13428	1488 aa	Known RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	SGK1	O00141	431 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	OR7A17	O14581	309 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	PALM	O75781	387 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	NEBL	O76041	1014 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	ADCY5	O95622	1261 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	NPPA	P01160	153 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	IGHV3-23	P01764	117 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	RHOXF2B	P0C7M4	288 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	GNS	P15586	552 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	OR3A4P	P47883	348 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	BLVRA	P53004	296 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	PLTP	P55058	493 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	RPS8	P62241	208 aa	Known RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	NCBP1	Q09161	790 aa	Known RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	CCDC14	Q49A88	953 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	CEP55	Q53EZ4	464 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	ZNF57	Q68EA5	555 aa	Predicted RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	ADGRD2	Q7Z7M1	963 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	SPATA24	Q86W54	205 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	FAM9C	Q8IZT9	166 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	CENPS	Q8N2Z9	138 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	ADAMTS16	Q8TE57	1224 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	PIBF1	Q8WXW3	757 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	PHYHIP	Q92561	330 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	PSKH2	Q96QS6	385 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	RHOXF2	Q9BQY4	288 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	STMN4	Q9H169	189 aa	Predicted RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	CLSTN2	Q9H4D0	955 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	LIN28A	Q9H9Z2	209 aa	Known RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	PARVG	Q9HBI0	331 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	CRLF2	Q9HC73	371 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	MID1IP1	Q9NPA3	183 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	DCAF13	Q9NV06	445 aa	Known RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	CYP39A1	Q9NYL5	469 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	HMG20B	Q9P0W2	317 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	TRMT6	Q9UJA5	497 aa	Known RBP	3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	TMED5	Q9Y3A6	229 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	TEX264	Q9Y6I9	313 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	CLASP1	Q7Z460	1538 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	EHBP1L1	Q8N3D4	1523 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	PLEKHG2	Q9H7P9	1386 aa		3.99	□□□□□ -1.77
YBX3-210	ENST00000540975	FANCD2	Q9BXW9	1451 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	GRIN2D	O15399	1336 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	NAIP	Q13075	1403 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	COL4A4	P53420	1690 aa	Predicted RBP	3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	CLRN2	A0PK11	232 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	TMEM89	A2RUT3	159 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	CCDC169	A6NNP5	214 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	RIPK2	O43353	540 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	TPM1	P09493	284 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	CYP11B1	P15538	503 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	ZNF3	P17036	446 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	RPA1	P27694	616 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	RFC2	P35250	354 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	UGT1A3	P35503	534 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	PSMD7	P51665	324 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	ZNF133	P52736	654 aa	Predicted RBP	3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	CASP9	P55211	416 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	B2M	P61769	119 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	RPS6	P62753	249 aa	Known RBP	3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	BEX3	Q00994	111 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	DR1	Q01658	176 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	NME3	Q13232	169 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	KYAT1	Q16773	422 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	KLHL40	Q2TBA0	621 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	ACSF3	Q4G176	576 aa	Predicted RBP	3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	AADACL4	Q5VUY2	407 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	LIPK	Q5VXJ0	399 aa		3.98	□□□□□ -1.77
YBX3-210	ENST00000540975	RAB12	Q6IQ22	244 aa		3.98	□□□□□ -1.77

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