RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ART3Q13508 389 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 SELPLGQ14242 412 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 GNA13Q14344 377 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 MAPK14Q16539 360 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 GLIPR1L2Q4G1C9 344 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 OLIG3Q7RTU3 272 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 SERPINA11Q86U17 422 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 CALHM3Q86XJ0 350 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 PTOV1Q86YD1 416 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 FAM71CQ8NEG0 241 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 OR2M3Q8NG83 312 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 DUSP19Q8WTR2 217 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 RCN3Q96D15 328 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 ZG16BQ96DA0 208 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 TREX2Q9BQ50 279 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-206ENST00000531480 SLC39A3Q9BRY0 314 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 OR2B2Q9GZK3 357 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 C1orf21Q9H246 121 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 MTHFD2LQ9H903 347 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-206ENST00000531480 GID8Q9NWU2 228 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 PPP4R1LQ9P1A2 415 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 FBXL2Q9UKC9 423 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 NPIPA1Q9UND3 350 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 ZNF835Q9Y2P0 537 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 FLNCQ14315 2725 aa13.17□□□□□ -0.3
CPSF1-206ENST00000531480 NPIPA5A0A0B4J1W7 369 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 A0A0G2JPF8 293 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 HNRNPCL2B2RXH8 293 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 HNRNPCL3B7ZW38 293 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 NPIPA7E9PJI5 369 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 GYG2O15488 501 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 UBOX5O94941 541 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 CELA3AP09093 270 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 NPIPA8P0DM63 369 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 HNRNPCL4P0DMR1 293 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 NR2F1P10589 423 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 SRD5A2P31213 254 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 MTPNP58546 118 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 PLAURQ03405 335 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 RBBP4Q09028 425 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 CAPRIN1Q14444 709 aaKnown RBP13.16□□□□□ -0.3
CPSF1-206ENST00000531480 FGFBP1Q14512 234 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 GANABQ14697 944 aaKnown RBP13.16□□□□□ -0.3
CPSF1-206ENST00000531480 SLC10A1Q14973 349 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 GPR68Q15743 365 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 IGFBP7Q16270 282 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 ZNF630Q2M218 657 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-206ENST00000531480 GPAT3Q53EU6 434 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 NHSL2Q5HYW2 709 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 PDZK1Q5T2W1 519 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 GCNT6Q5T4J0 391 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 Q6ZPB1 254 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-206ENST00000531480 TRILQ7L0X0 811 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 FGD2Q7Z6J4 655 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 C10orf67Q8IYJ2 551 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 GHDCQ8N2G8 530 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 TMEM19Q96HH6 336 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 JSRP1Q96MG2 331 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-206ENST00000531480 SH3GL1Q99961 368 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 SPATA9Q9BWV2 254 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 TRIM8Q9BZR9 551 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 TSPAN10Q9H1Z9 355 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-206ENST00000531480 SEC14L3Q9UDX4 400 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 ICAM5Q9UMF0 924 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 AP3M1Q9Y2T2 418 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 L3MBTL1Q9Y468 752 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 ESPL1Q14674 2120 aa13.16□□□□□ -0.3
CPSF1-206ENST00000531480 SERINC4A6NH21 518 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 ZIC3O60481 467 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 EIF4E2O60573 245 aaKnown RBP13.15□□□□□ -0.3
CPSF1-206ENST00000531480 BCHEP06276 602 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 ETS2P15036 469 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 HPGDP15428 266 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 GDF1P27539 372 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 PGM1P36871 562 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 SUMO3P55854 103 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-206ENST00000531480 DSCR4P56555 118 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-206ENST00000531480 HPCAP84074 193 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 TMEM44Q2T9K0 475 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 GLYR1Q49A26 553 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-206ENST00000531480 RABL3Q5HYI8 236 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 C16orf89Q6UX73 402 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 CMIPQ8IY22 773 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 TOR1AIP2Q8NFQ8 470 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 NEIL3Q8TAT5 605 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 MAL2Q969L2 176 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 C1GALT1C1Q96EU7 318 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 DTNBP1Q96EV8 351 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 HOPXQ9BPY8 73 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-206ENST00000531480 THUMPD3Q9BV44 507 aaKnown RBP13.15□□□□□ -0.3
CPSF1-206ENST00000531480 LIPGQ9Y5X9 500 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 HIVEP3Q5T1R4 2406 aa13.15□□□□□ -0.3
CPSF1-206ENST00000531480 FLNBO75369 2602 aaKnown RBP13.14□□□□□ -0.31
CPSF1-206ENST00000531480 C15orf38-AP3S2A0A0A6YYH1 394 aa13.14□□□□□ -0.31
CPSF1-206ENST00000531480 C7orf72A4D263 438 aa13.14□□□□□ -0.31
CPSF1-206ENST00000531480 OR14I1A6ND48 311 aa13.14□□□□□ -0.31
CPSF1-206ENST00000531480 TMEM247A6NEH6 219 aa13.14□□□□□ -0.31
CPSF1-206ENST00000531480 ANKUB1A6NFN9 424 aa13.14□□□□□ -0.31
CPSF1-206ENST00000531480 H3BNH8 94 aa13.14□□□□□ -0.31
CPSF1-206ENST00000531480 ETV2O00321 342 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms