RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 GP2P55259 537 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 NRG3P56975 720 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 PCBP3P57721 371 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 KCNJ2P63252 427 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 SELENOWP63302 87 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 MRPS22P82650 360 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 Q0VFX4 171 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 IL10RAQ13651 578 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 SCARB2Q14108 478 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 MAPK11Q15759 364 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 SYPL1Q16563 259 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.81□□□□□ -1.32
CD44-228ENST00000528455 ZSWIM7Q19AV6 140 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 GPAT3Q53EU6 434 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 MTX3Q5HYI7 312 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 NUP54Q7Z3B4 507 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 C16orf62Q7Z3J2 963 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 VASH2Q86V25 355 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 RPS19BP1Q86WX3 136 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 DHFR2Q86XF0 187 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 KRT73Q86Y46 540 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 AQP12AQ8IXF9 295 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 C9orf40Q8IXQ3 194 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 DND1Q8IYX4 353 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 EID3Q8N140 333 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 BCORP1Q8N888 145 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 COX18Q8N8Q8 333 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 CLEC1AQ8NC01 280 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 BHLHE22Q8NFJ8 381 aaPredicted RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 OR5D16Q8NGK9 328 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 RASSF5Q8WWW0 418 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 PSMF1Q92530 271 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 JADE3Q92613 823 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 DIO2Q92813 273 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 CDS1Q92903 461 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 ZNF354BQ96LW1 612 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 TREX2Q9BQ50 279 aaPredicted RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 ITPAQ9BY32 194 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 PCDHAC1Q9H158 963 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 NXF5Q9H1B4 397 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 ZNF160Q9HCG1 818 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 DCAF13Q9NV06 445 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 OLAHQ9NV23 265 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 TEKT2Q9UIF3 430 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 MAGEL2Q9UJ55 1249 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 FBXL4Q9UKA2 621 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 PACSIN3Q9UKS6 424 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 IFT52Q9Y366 437 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 OR10H1Q9Y4A9 318 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 SNX13Q9Y5W8 968 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 NPFFR2Q9Y5X5 522 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 MRPS18BQ9Y676 258 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 GCN1Q92616 2671 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 NINQ8N4C6 2090 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 OR6C70A6NIJ9 312 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 A8MUI8 341 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 SLC28A2O43868 658 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 TSPAN2O60636 221 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 NME6O75414 186 aaPredicted RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 REM1O75628 298 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 CIB2O75838 187 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 SORBS2O94875 1100 aaKnown RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 MFN2O95140 757 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 H6PDO95479 791 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 C8BP07358 591 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ENDOUP21128 410 aaKnown RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 KRT20P35900 424 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ATP12AP54707 1039 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 CORO7P57737 925 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 MLF1P58340 268 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ZNF155Q12901 538 aaPredicted RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 SRSF6Q13247 344 aaKnown RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 ATP1A4Q13733 1029 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 EFR3AQ14156 821 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ZNF141Q15928 474 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 DCST2Q5T1A1 773 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 LCN8Q6JVE9 175 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 TCTN3Q6NUS6 607 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 OPN5Q6U736 354 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 PCSK4Q6UW60 755 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 NPSR1Q6W5P4 371 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 APLFQ8IW19 511 aaPredicted RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 SLC34A3Q8N130 599 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 SLC5A8Q8N695 610 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ANKFN1Q8N957 763 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 FAM156AQ8NDB6 213 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 NFKBIDQ8NI38 313 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 BBS10Q8TAM1 723 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 SLC22A8Q8TCC7 542 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 SPPL2AQ8TCT8 520 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 PIK3R3Q92569 461 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 MAL2Q969L2 176 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 DUS3LQ96G46 650 aaKnown RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 TMEM19Q96HH6 336 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 LRGUKQ96M69 825 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 LMF1Q96S06 567 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 TRIM15Q9C019 465 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ZNF350Q9GZX5 532 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 LHPPQ9H008 270 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 SLC38A1Q9H2H9 487 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms