RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MKKSQ9NPJ1 570 aaPredicted RBP19.13■□□□□ 0.65
VPS28-209ENST00000528142 CLN6Q9NWW5 311 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 DNAJB12Q9NXW2 375 aaKnown RBP19.13■□□□□ 0.65
VPS28-209ENST00000528142 CNIH4Q9P003 139 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 OR10H1Q9Y4A9 318 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 H3BMQ9 156 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 ARHGAP33O14559 1287 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 CDK1P06493 297 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 ATP12AP54707 1039 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 EFNB1P98172 346 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 FGFBP1Q14512 234 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 GINS1Q14691 196 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 ELAVL1Q15717 326 aaKnown RBP19.12■□□□□ 0.65
VPS28-209ENST00000528142 SYT6Q5T7P8 510 aaPredicted RBP19.12■□□□□ 0.65
VPS28-209ENST00000528142 WDR88Q6ZMY6 472 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 COX15Q7KZN9 410 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 IQCF1Q8N6M8 205 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 POGLUT1Q8NBL1 392 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 ZNF721Q8TF20 911 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 RORBQ92753 470 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 COG8Q96MW5 612 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 SLC46A1Q96NT5 459 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 IL4I1Q96RQ9 567 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 DSN1Q9H410 356 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 EGLN3Q9H6Z9 239 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 SLC25A19Q9HC21 320 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.12■□□□□ 0.65
VPS28-209ENST00000528142 GPR83Q9NYM4 423 aa19.12■□□□□ 0.65
VPS28-209ENST00000528142 PIP5K1CO60331 668 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ADAM11O75078 769 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 CER1O95813 267 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 FADS2O95864 444 aaKnown RBP19.11■□□□□ 0.65
VPS28-209ENST00000528142 CKMT1AP12532 417 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 C21orf33P30042 268 aaPredicted RBP19.11■□□□□ 0.65
VPS28-209ENST00000528142 ACAA2P42765 397 aaKnown RBP19.11■□□□□ 0.65
VPS28-209ENST00000528142 PSMD4P55036 377 aaKnown RBP19.11■□□□□ 0.65
VPS28-209ENST00000528142 ACSM5Q6NUN0 579 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 CASP12Q6UXS9 341 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 MRGPREQ86SM8 312 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 LAPTM4BQ86VI4 370 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 OR8J1Q8NGP2 316 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 SLC2A12Q8TD20 617 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 SLC35B4Q969S0 331 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 CCDC74BQ96LY2 380 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ZNF559Q9BR84 538 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 VN1R1Q9GZP7 353 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 C14orf105Q9NVL8 296 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ZNF223Q9UK11 482 aaPredicted RBP19.11■□□□□ 0.65
VPS28-209ENST00000528142 CLCA3PQ9Y6N3 262 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 WDR87Q6ZQQ6 2873 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ENO4A6NNW6 628 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ATE1O95260 518 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 RORAP35398 523 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 STAT5AP42229 794 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 PPICP45877 212 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 SLC15A1P46059 708 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 NSDHLQ15738 373 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ZSWIM7Q19AV6 140 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ZNF613Q6PF04 617 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 ZNF614Q8N883 585 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 SLC38A9Q8NBW4 561 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 B3GNT7Q8NFL0 401 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 OR8D4Q8NGM9 314 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 OR4C3Q8NH37 302 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 IFI44Q8TCB0 444 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 FGF11Q92914 225 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 OR6C1Q96RD1 312 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 POLDIP3Q9BY77 421 aaKnown RBP19.11■□□□□ 0.65
VPS28-209ENST00000528142 OR8D2Q9GZM6 311 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 SELENONQ9NZV5 590 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 CTSFQ9UBX1 484 aa19.11■□□□□ 0.65
VPS28-209ENST00000528142 DYRK3O43781 588 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 ENTPD6O75354 484 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 TIAF1O95411 115 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 SH3BGRP55822 239 aaPredicted RBP19.1■□□□□ 0.65
VPS28-209ENST00000528142 SLC25A30Q5SVS4 291 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 CMIPQ8IY22 773 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 RNF113BQ8IZP6 322 aaKnown RBP19.1■□□□□ 0.65
VPS28-209ENST00000528142 PLPP5Q8NEB5 264 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 CLIP3Q96DZ5 547 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 LMF1Q96S06 567 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 FUNDC2Q9BWH2 189 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 TGIF2Q9GZN2 237 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 SMOC1Q9H4F8 434 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 SIDT1Q9NXL6 827 aaKnown RBP19.1■□□□□ 0.65
VPS28-209ENST00000528142 TVP23BQ9NYZ1 205 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 CNOT2Q9NZN8 540 aaKnown RBP19.1■□□□□ 0.65
VPS28-209ENST00000528142 FLRT3Q9NZU0 649 aa19.1■□□□□ 0.65
VPS28-209ENST00000528142 IGLV3-12A0A075B6K2 115 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 PRKYO43930 277 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 PRKNO60260 465 aaPredicted RBP19.09■□□□□ 0.65
VPS28-209ENST00000528142 MAN1A2O60476 641 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 STSP08842 583 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 GPR4P46093 362 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 PCYT1AP49585 367 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 SMSP52788 366 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 OCLNQ16625 522 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 UBE2UQ5VVX9 321 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 CCDC81Q6ZN84 652 aa19.09■□□□□ 0.65
VPS28-209ENST00000528142 PRSS58Q8IYP2 241 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms