RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 HIVEP2P31629 2446 aa18.82■□□□□ 0.6
SQSTM1-210ENST00000506042 RAI1Q7Z5J4 1906 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 A0A1W2PQD3 144 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 KIF2AO00139 706 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 TNFSF11O14788 317 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 KLF4O43474 513 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 KRT16P08779 473 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 AGTR1P30556 359 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 CAPRIN1Q14444 709 aaKnown RBP18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 CLEC12BQ2HXU8 276 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 ALKBH2Q6NS38 261 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 ADAM5Q6NVV9 412 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 IFT20Q8IY31 132 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 SLC43A2Q8N370 569 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 B4GALNT2Q8NHY0 566 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 PIK3R3Q92569 461 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 JADE3Q92613 823 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 RNF145Q96MT1 663 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 REPIN1Q9BWE0 567 aaKnown RBP18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 GSTO2Q9H4Y5 243 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 C12orf49Q9H741 205 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 ACSS1Q9NUB1 689 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 FLRT3Q9NZU0 649 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 SH3BP4Q9P0V3 963 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 TMED5Q9Y3A6 229 aa18.81■□□□□ 0.6
SQSTM1-210ENST00000506042 A0A1W2PP18 115 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 A0A1W2PRB8 838 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 C17orf51A8MQB3 221 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 LOXP28300 417 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 ADH6P28332 368 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 P2RY6Q15077 328 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 PLPPR5Q32ZL2 321 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 ZYG11AQ6WRX3 759 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 FRMD7Q6ZUT3 714 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 CXXC5Q7LFL8 322 aaKnown RBP18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 GALNT10Q86SR1 603 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 PRIMA1Q86XR5 153 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 LILRA2Q8N149 483 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 CEP112Q8N8E3 955 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 OSTF1Q92882 214 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 KISS1RQ969F8 398 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 MTERF3Q96E29 417 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 REEP4Q9H6H4 257 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 MED17Q9NVC6 651 aa18.8■□□□□ 0.6
SQSTM1-210ENST00000506042 GXYLT2A0PJZ3 443 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 B4DXG7 233 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 GOLGA8RI6L899 631 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 CLOCKO15516 846 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 TLX2O43763 284 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 CRLF1O75462 422 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 PRKD3O94806 890 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 THBDP07204 575 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 PRPH2P23942 346 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 MAPK1P28482 360 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 SLC6A8P48029 635 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 SUMO3P55854 103 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 POU6F2P78424 691 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 HEPHL1Q6MZM0 1159 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 LRIG3Q6UXM1 1119 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 ZNF551Q7Z340 670 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 NATD1Q8N6N6 113 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 MUCL1Q96DR8 90 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 SH3YL1Q96HL8 342 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 HS6ST2Q96MM7 605 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 TMEM204Q9BSN7 226 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 PPCSQ9HAB8 311 aa18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 GPC6Q9Y625 555 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.79■□□□□ 0.6
SQSTM1-210ENST00000506042 TMEM114B3SHH9 223 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 TBX19O60806 448 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 SLC7A1P30825 629 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 HPCAL1P37235 193 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 DNAJB13P59910 316 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 UBAP2Q5T6F2 1119 aaKnown RBP18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 PODNL1Q6PEZ8 512 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 GATSQ8NAP1 163 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 OR4C3Q8NH37 302 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 S100PBPQ96BU1 408 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 C16orf45Q96MC5 204 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 BTBD2Q9BX70 525 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 POTEKPQ9BYX7 375 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 RTN4RQ9BZR6 473 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 TMEM185BQ9H7F4 350 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 FBXO34Q9NWN3 711 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 KLHL9Q9P2J3 617 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 KLHL13Q9P2N7 655 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 HEATR5AQ86XA9 2040 aa18.78■□□□□ 0.6
SQSTM1-210ENST00000506042 KIAA1324LA8MWY0 1029 aaPredicted RBP18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 SHISA8B8ZZ34 492 aa18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 GTPBP1O00178 669 aaKnown RBP18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 RIPK2O43353 540 aa18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 KCNK2O95069 426 aa18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 SFTPDP35247 375 aa18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 TNK1Q13470 666 aa18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 ZNF239Q16600 458 aaKnown RBP18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 NRF1Q16656 503 aa18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 CTU2Q2VPK5 515 aaKnown RBP18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 FIGNL1Q6PIW4 674 aa18.77■□□□□ 0.6
SQSTM1-210ENST00000506042 TDRPQ86YL5 185 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms