RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 USP9YO00507 2555 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 NCKAP5O14513 1909 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 HECTD1Q9ULT8 2610 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 A0A087WZY1 265 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 TMEM247A6NEH6 219 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 GMFGO60234 142 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 NUDT14O95848 222 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 IL2RAP01589 272 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 PEPDP12955 493 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 CAPN3P20807 821 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 TCEA1P23193 301 aaKnown RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 PPIBP23284 216 aaKnown RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 HTR1EP28566 365 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 ATP12AP54707 1039 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 NUP107P57740 925 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 EEFSECP57772 596 aaKnown RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 ARHGAP11BQ3KRB8 267 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 GLYR1Q49A26 553 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 NCCRP1Q6ZVX7 275 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 RNF130Q86XS8 419 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 LACC1Q8IV20 430 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 GATSQ8NAP1 163 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 CHDHQ8NE62 594 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 PHOSPHO1Q8TCT1 267 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 C1GALT1C1Q96EU7 318 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 TPT1P8Q9HAU6 139 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 POLE3Q9NRF9 147 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 THUMPD1Q9NXG2 353 aaKnown RBP14.86□□□□□ -0.03
SF3A1-209ENST00000496189 HRH3Q9Y5N1 445 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 CAPN7Q9Y6W3 813 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 COL12A1Q99715 3063 aa14.86□□□□□ -0.03
SF3A1-209ENST00000496189 SPTBN1Q01082 2364 aaKnown RBP14.85□□□□□ -0.03
SF3A1-209ENST00000496189 IGLV3-32A0A0A0MS00 114 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 HSPB2A8KAH6 182 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 HCRTR2O43614 444 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 SNX3O60493 162 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 EPPINO95925 133 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 OR12D1P0DN82 309 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 CPN1P15169 458 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 POU3F2P20265 443 aaPredicted RBP14.85□□□□□ -0.03
SF3A1-209ENST00000496189 GFRA1P56159 465 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 SRYQ05066 204 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 KLF10Q13118 480 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 GPR68Q15743 365 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 HSPB2Q16082 182 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 ACSF3Q4G176 576 aaPredicted RBP14.85□□□□□ -0.03
SF3A1-209ENST00000496189 GPAT3Q53EU6 434 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 RIPPLY2Q5TAB7 128 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 MEIOBQ8N635 442 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 TMCO5AQ8N6Q1 288 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 B4GALNT2Q8NHY0 566 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 ZFP90Q8TF47 636 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 LRRC46Q96FV0 321 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 WDYHV1Q96HA8 205 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 SH3YL1Q96HL8 342 aaPredicted RBP14.85□□□□□ -0.03
SF3A1-209ENST00000496189 TRIB1Q96RU8 372 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 SDF2Q99470 211 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 NMUR2Q9GZQ4 415 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 PAIP1Q9H074 479 aaKnown RBP14.85□□□□□ -0.03
SF3A1-209ENST00000496189 KCNJ16Q9NPI9 418 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 SLC52A3Q9NQ40 469 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 FBXO34Q9NWN3 711 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 CORO2BQ9UQ03 480 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 LIPT1Q9Y234 373 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 RNF6Q9Y252 685 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 DTNAQ9Y4J8 743 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 PCDHB14Q9Y5E9 798 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 FAM215AQ9Y5M1 114 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 KCNE3Q9Y6H6 103 aa14.85□□□□□ -0.03
SF3A1-209ENST00000496189 SPTAN1Q13813 2472 aaKnown RBP14.85□□□□□ -0.03
SF3A1-209ENST00000496189 CLIC1O00299 241 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 ZIC3O60481 467 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 GLI4P10075 376 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 ME2P23368 584 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 CASP9P55211 416 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 BCL2A1Q16548 175 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 MMEL1Q495T6 779 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 LRIF1Q5T3J3 769 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 APOOLQ6UXV4 268 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 ZAR1Q86SH2 424 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 RPRMLQ8N4K4 120 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 MARVELD2Q8N4S9 558 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 ZPLD1Q8TCW7 415 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 OIT3Q8WWZ8 545 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 ZBTB8AQ96BR9 441 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 CALHM2Q9HA72 323 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 CACYBPQ9HB71 228 aaKnown RBP14.84□□□□□ -0.03
SF3A1-209ENST00000496189 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.84□□□□□ -0.03
SF3A1-209ENST00000496189 VDAC3Q9Y277 283 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 WDR45Q9Y484 360 aa14.84□□□□□ -0.03
SF3A1-209ENST00000496189 BBIP1A8MTZ0 92 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 EVPLLA8MZ36 301 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 H3BML4 177 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 DVL2O14641 736 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF17P17021 662 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 CRATP43155 626 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 SUMO3P55854 103 aaPredicted RBP14.83□□□□□ -0.04
SF3A1-209ENST00000496189 RPS3AP61247 264 aaKnown RBP14.83□□□□□ -0.04
SF3A1-209ENST00000496189 FADDQ13158 208 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 GNA13Q14344 377 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms