RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PLA2G12AQ9BZM1 189 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 KLHL25Q9H0H3 589 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 DCSTAMPQ9H295 470 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 FN3KQ9H479 309 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 ADAP2Q9NPF8 381 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 TVP23BQ9NYZ1 205 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.96□□□□□ -0.82
USP4-214ENST00000491791 ERGIC3Q9Y282 383 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 TMEM5Q9Y2B1 443 aa9.96□□□□□ -0.82
USP4-214ENST00000491791 EXOGQ9Y2C4 368 aaKnown RBP9.96□□□□□ -0.82
USP4-214ENST00000491791 CNOT1A5YKK6 2376 aaKnown RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 A0A075B6Q4 140 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 CPSF4LA6NMK7 179 aaKnown RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 K7ESF4 209 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 M0R129 80 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 TAF4O00268 1085 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 CLDN4O14493 209 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 ARHGAP33O14559 1287 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 AQP9O43315 295 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 TLX2O43763 284 aaPredicted RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 SULT1C4O75897 302 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 KCNK2O95069 426 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 MED26O95402 600 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 ZBTB11O95625 1053 aaPredicted RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 RAB36O95755 333 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 IGF2P01344 180 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 HTR2AP28223 471 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 CD40LGP29965 261 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 GRK5P34947 590 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 AVPR1BP47901 424 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 CLK1P49759 484 aaKnown RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 LSM11P83369 360 aaKnown RBP eCLIP9.95□□□□□ -0.82
USP4-214ENST00000491791 PSG6Q00889 435 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 PLAURQ03405 335 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 ACSM1Q08AH1 577 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 TPBGQ13641 420 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 SERTAD2Q14140 314 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 SNAPC1Q16533 368 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 ZNF404Q494X3 552 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 MRPL2Q5T653 305 aaKnown RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 LINC00114Q6XXX2 140 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 RRM2BQ7LG56 351 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 WDR53Q7Z5U6 358 aaPredicted RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 WDR5BQ86VZ2 330 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 GALNT12Q8IXK2 581 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 NRMQ8IXM6 262 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 TMEFF1Q8IYR6 380 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 FAM160A2Q8N612 972 aaPredicted RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 MINDY2Q8NBR6 621 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 OR7G1Q8NGA0 311 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 OR52I1Q8NGK6 324 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 LMX1AQ8TE12 382 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 RLN3Q8WXF3 142 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 RPL3LQ92901 407 aaKnown RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 ZDHHC12Q96GR4 267 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 LOXL4Q96JB6 756 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 LRR1Q96L50 414 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 OR5M11Q96RB7 305 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 SLC38A3Q99624 504 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 MAP3K3Q99759 626 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 ALOXE3Q9BYJ1 711 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 FOLH1BQ9HBA9 442 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 HHATLQ9HCP6 504 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 NDUFB11Q9NX14 153 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 DNAJC27Q9NZQ0 273 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 SEC14L4Q9UDX3 406 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 EXOSC1Q9Y3B2 195 aaKnown RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 MMACHCQ9Y4U1 282 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 CORINQ9Y5Q5 1042 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 NINQ8N4C6 2090 aa9.95□□□□□ -0.82
USP4-214ENST00000491791 KMT2BQ9UMN6 2715 aaPredicted RBP9.95□□□□□ -0.82
USP4-214ENST00000491791 RALGAPA1Q6GYQ0 2036 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 SCN3AQ9NY46 2000 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 CCDC163A0A0D9SF12 145 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 CENPVL1A0A0U1RR11 272 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 SYNDIG1LA6NDD5 238 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 TGFBR3LH3BV60 316 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 SURF4O15260 269 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 FRS3O43559 492 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 PRAMEF2O60811 474 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 CBFA2T3O75081 653 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 CSO75390 466 aaKnown RBP9.94□□□□□ -0.82
USP4-214ENST00000491791 NR4A1P22736 598 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 LCN1P31025 176 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 GABRA3P34903 492 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 IDUAP35475 653 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 ADH7P40394 386 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 ID2Q02363 134 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 DMWDQ09019 674 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 SRSF5Q13243 272 aaKnown RBP9.94□□□□□ -0.82
USP4-214ENST00000491791 GRM7Q14831 915 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 OR1Q1Q15612 314 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 ZNHIT3Q15649 155 aaPredicted RBP9.94□□□□□ -0.82
USP4-214ENST00000491791 GPR68Q15743 365 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 SSX1Q16384 188 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP4-214ENST00000491791 PGGHGQ32M88 737 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 ARMC4Q5T2S8 1044 aa9.94□□□□□ -0.82
USP4-214ENST00000491791 YOD1Q5VVQ6 348 aaPredicted RBP9.94□□□□□ -0.82
USP4-214ENST00000491791 NXNL2Q5VZ03 156 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms