RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ARHGDIGQ99819 225 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 ITPAQ9BY32 194 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 NMNAT1Q9HAN9 279 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-230ENST00000488543 SERTAD3Q9UJW9 196 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 PCDHGB2Q9Y5G2 931 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 KIF26BQ2KJY2 2108 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 D6RAR5 112 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 SYT5O00445 386 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 DSCR3O14972 297 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 SSX4O60224 188 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 ALOX5P09917 674 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 FOXL2P58012 376 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 ZCCHC12Q6PEW1 402 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 KMT5CQ86Y97 462 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 GPR135Q8IZ08 494 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 CDRT4Q8N9R6 151 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 OR6T1Q8NGN1 323 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 OR51Q1Q8NH59 317 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 S100ZQ8WXG8 99 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 SDF2Q99470 211 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 CTRCQ99895 268 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 GPR55Q9Y2T6 319 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-230ENST00000488543 PCNX2A6NKB5 2137 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 FER1L5A0AVI2 2057 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 ARRDC5A6NEK1 342 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 TOX3O15405 576 aaPredicted RBP11.27□□□□□ -0.61
HDAC6-230ENST00000488543 OR10H2O60403 315 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 CCNB2O95067 398 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 ANXA8P13928 327 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 ACP1P24666 158 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 ELAVL4P26378 380 aaKnown RBP11.27□□□□□ -0.61
HDAC6-230ENST00000488543 POU1F1P28069 291 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 SERPINB10P48595 397 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 CXCR4P61073 352 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 SEC23BQ15437 767 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF311Q5JNZ3 666 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 CCNJQ5T5M9 372 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 STEAP3Q658P3 488 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 SPATC1Q76KD6 591 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 NAXDQ8IW45 347 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 TMEM151BQ8IW70 566 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 VWA5B2Q8N398 1253 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 OR52R1Q8NGF1 315 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 SLC38A4Q969I6 547 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 OR5M11Q96RB7 305 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 STACQ99469 402 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 YIPF2Q9BWQ6 316 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF350Q9GZX5 532 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 TMEM9BQ9NQ34 198 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 DUSP22Q9NRW4 184 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 LANCL2Q9NS86 450 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 PSORS1C1Q9UIG5 152 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 MKLN1Q9UL63 735 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 MRPS33Q9Y291 106 aaKnown RBP11.27□□□□□ -0.61
HDAC6-230ENST00000488543 HCN4Q9Y3Q4 1203 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 KNTC1P50748 2209 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 ASPMQ8IZT6 3477 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 CENPVL1A0A0U1RR11 272 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 HRKO00198 91 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 H1F0P07305 194 aaKnown RBP11.27□□□□□ -0.61
HDAC6-230ENST00000488543 MSL3P1P0C860 447 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 ADORA3P0DMS8 318 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 MAOAP21397 527 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 GGT2P36268 569 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 TMED10P49755 219 aaKnown RBP11.27□□□□□ -0.61
HDAC6-230ENST00000488543 TPTEP56180 551 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 OR52P1PQ8NH57 321 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 PIK3R3Q92569 461 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 MAN2C1Q9NTJ4 1040 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 FBXO34Q9NWN3 711 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 NCDNQ9UBB6 729 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 POU2F3Q9UKI9 436 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 SATB2Q9UPW6 733 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 SLC9A8Q9Y2E8 581 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 POFUT2Q9Y2G5 429 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 WDR45Q9Y484 360 aa11.27□□□□□ -0.61
HDAC6-230ENST00000488543 GXYLT2A0PJZ3 443 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 TPST2O60704 377 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 NKX2-2O95096 273 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 ANKRD34CP0C6C1 535 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 CCL4P13236 92 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 RPS4Y1P22090 263 aaKnown RBP11.26□□□□□ -0.61
HDAC6-230ENST00000488543 PRKAR1BP31321 381 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 RCVRNP35243 200 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 RAB15P59190 212 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 ST3GAL4Q11206 333 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 STX4Q12846 297 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 MADCAM1Q13477 382 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 PIN1Q13526 163 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-230ENST00000488543 DCST2Q5T1A1 773 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 UBE2UQ5VVX9 321 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 PWWP2BQ6NUJ5 590 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 LYSMD2Q8IV50 215 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 GALNT12Q8IXK2 581 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 DPYSL5Q9BPU6 564 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 NDC1Q9BTX1 674 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 SAP130Q9H0E3 1048 aa11.26□□□□□ -0.61
HDAC6-230ENST00000488543 MTHFD2LQ9H903 347 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF443Q9Y2A4 671 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-230ENST00000488543 HSPE1-MOB4S4R3N1 261 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms