RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ACTL6AO96019 429 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 ZCCHC18P0CG32 403 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 AGAP20933 346 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 CRATP43155 626 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 STARP49675 285 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 NUP107P57740 925 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 IRX1P78414 480 aaPredicted RBP13.38□□□□□ -0.27
USP4-212ENST00000486549 ZNF117Q03924 483 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 SRYQ05066 204 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 PMPCAQ10713 525 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 GANABQ14697 944 aaKnown RBP13.38□□□□□ -0.27
USP4-212ENST00000486549 SYPL1Q16563 259 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 ZNF630Q2M218 657 aaPredicted RBP13.38□□□□□ -0.27
USP4-212ENST00000486549 NDUFAF6Q330K2 333 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 NHSL2Q5HYW2 709 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 PDZK1Q5T2W1 519 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 RTL6Q6ICC9 239 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 TMEM211Q6ICI0 200 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 TYW3Q6IPR3 259 aaKnown RBP13.38□□□□□ -0.27
USP4-212ENST00000486549 AAGABQ6PD74 315 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 ARSKQ6UWY0 536 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 B3GNT6Q6ZMB0 384 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 HMGN2P46Q86SG4 172 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 MISPQ8IVT2 679 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 ZNF808Q8N4W9 903 aaPredicted RBP13.38□□□□□ -0.27
USP4-212ENST00000486549 TMCO5AQ8N6Q1 288 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 ANKFN1Q8N957 763 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 PRDM14Q9GZV8 571 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 ZNF350Q9GZX5 532 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 PAIP1Q9H074 479 aaKnown RBP13.38□□□□□ -0.27
USP4-212ENST00000486549 ZNF385DQ9H6B1 395 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 TPT1P8Q9HAU6 139 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 CHST11Q9NPF2 352 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 MRPS18CQ9Y3D5 142 aaKnown RBP13.38□□□□□ -0.27
USP4-212ENST00000486549 WDR45Q9Y484 360 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 DTNAQ9Y4J8 743 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 PCDHB14Q9Y5E9 798 aa13.38□□□□□ -0.27
USP4-212ENST00000486549 A0A096LPI6 279 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 PRAMEF27A3QJZ7 478 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 FAM47E-STBD1D6RA91 191 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 NPIPB9F8W1W9 429 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 H0Y3Z8 333 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 GTPBP1O00178 669 aaKnown RBP13.37□□□□□ -0.27
USP4-212ENST00000486549 HNRNPRO43390 633 aaKnown RBP13.37□□□□□ -0.27
USP4-212ENST00000486549 OIP5O43482 229 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 H6PDO95479 791 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 NUDT14O95848 222 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 ETFAP13804 333 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 GABRA1P14867 456 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 GFRA1P56159 465 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 B3GALT5-AS1P59052 145 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 KLHL26Q53HC5 615 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 PAGE3Q5JUK9 113 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 ENPP6Q6UWR7 440 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 FRRS1Q6ZNA5 592 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 PM20D2Q8IYS1 436 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 OR10Q1Q8NGQ4 319 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 B4GALNT2Q8NHY0 566 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 SDCCAG3Q96C92 435 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 WDYHV1Q96HA8 205 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 NMUR2Q9GZQ4 415 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 HHATLQ9HCP6 504 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 SLAMF8Q9P0V8 285 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 KCNE5Q9UJ90 142 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 CARD8Q9Y2G2 431 aa13.37□□□□□ -0.27
USP4-212ENST00000486549 KIAA1549Q9HCM3 1950 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 SERINC4A6NH21 518 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 KDM4EB2RXH2 506 aaPredicted RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 H3BML4 177 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 DYNC1I1O14576 645 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 KIAA0513O60268 411 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 UGT2B17O75795 530 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 CYP7B1O75881 506 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 GLI4P10075 376 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 NR2F1P10589 423 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 UBL4AP11441 157 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 POU3F2P20265 443 aaPredicted RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 MSX1P28360 303 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 CCR4P51679 360 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 ZNF41P51814 821 aaPredicted RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 MVDP53602 400 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 DSTNP60981 165 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 TXNL4AP83876 142 aaKnown RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 CHRNEQ04844 493 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 ACSF3Q4G176 576 aaPredicted RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 METTL21CQ5VZV1 264 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 HIST2H2BCQ6DN03 193 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 CBLN3Q6UW01 205 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 MTERF4Q7Z6M4 381 aaKnown RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 CCDC71Q8IV32 467 aaPredicted RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 UBQLNLQ8IYU4 475 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 ZNF619Q8N2I2 560 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 SMPDL3BQ92485 455 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 RND1Q92730 232 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 TRIB1Q96RU8 372 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 KLHDC3Q9BQ90 382 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 PIGQQ9BRB3 760 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 TTYH2Q9BSA4 534 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 QRSL1Q9H0R6 528 aaKnown RBP13.36□□□□□ -0.27
USP4-212ENST00000486549 SLC52A3Q9NQ40 469 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms