RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 UBL4AP11441 157 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 DNAJA1P31689 397 aaKnown RBP9.33□□□□□ -0.92
USP39-215ENST00000481409 RFX3P48380 749 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 RGS8P57771 180 aaPredicted RBP9.33□□□□□ -0.92
USP39-215ENST00000481409 VLDLRP98155 873 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 Q0VFX4 171 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 ST3GAL3Q11203 375 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 MAPK14Q16539 360 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 COLEC12Q5KU26 742 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 SWT1Q5T5J6 900 aaKnown RBP9.33□□□□□ -0.92
USP39-215ENST00000481409 ABHD17BQ5VST6 288 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 FNDC7Q5VTL7 733 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 BROXQ5VW32 411 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 ZNF613Q6PF04 617 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 RTL4Q6ZR62 310 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 ZAR1Q86SH2 424 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 ZNF605Q86T29 641 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 HIPK1Q86Z02 1210 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 GALNT16Q8N428 558 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 PACRGLQ8N7B6 248 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 LSMEM1Q8N8F7 131 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 POGLUT1Q8NBL1 392 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 PAQR8Q8TEZ7 354 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 SDCCAG3Q96C92 435 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 DHRS1Q96LJ7 313 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 PRRC1Q96M27 445 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 FRMD6Q96NE9 622 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 EPYCQ99645 322 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 ZNF559Q9BR84 538 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 C9orf16Q9BUW7 83 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 TRIM2Q9C040 744 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 AMBRA1Q9C0C7 1298 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 QRSL1Q9H0R6 528 aaKnown RBP9.33□□□□□ -0.92
USP39-215ENST00000481409 REEP1Q9H902 201 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 ZBTB20Q9HC78 741 aaPredicted RBP9.33□□□□□ -0.92
USP39-215ENST00000481409 HPF1Q9NWY4 346 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 KCNE5Q9UJ90 142 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 EXPH5Q8NEV8 1989 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 DMXL1Q9Y485 3027 aa9.33□□□□□ -0.92
USP39-215ENST00000481409 IGLV3-32A0A0A0MS00 114 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 A0A1W2PRQ8 180 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 PRAMEF25A6NGN4 478 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 H0YJX3 145 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 KLK10O43240 276 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 TPST1O60507 370 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 ICOSLGO75144 302 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 EPPINO95925 133 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 FPR1P21462 350 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 ITGA3P26006 1051 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 CYB561P49447 251 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 ERFP50548 548 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 HLCSP50747 726 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 COPZ1P61923 177 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 DGCR6Q14129 220 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 AGAP7PQ5VUJ5 663 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 FBXW10Q5XX13 1052 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 SHQ1Q6PI26 577 aaKnown RBP9.32□□□□□ -0.92
USP39-215ENST00000481409 ZDHHC13Q8IUH4 622 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 OFCC1Q8IZS5 231 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 CLIP4Q8N3C7 705 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 ZNF614Q8N883 585 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 OR6T1Q8NGN1 323 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 PHOSPHO1Q8TCT1 267 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 BRIX1Q8TDN6 353 aaKnown RBP9.32□□□□□ -0.92
USP39-215ENST00000481409 THAP3Q8WTV1 239 aaPredicted RBP9.32□□□□□ -0.92
USP39-215ENST00000481409 PHF10Q8WUB8 498 aaKnown RBP9.32□□□□□ -0.92
USP39-215ENST00000481409 DNAJA4Q8WW22 397 aaPredicted RBP9.32□□□□□ -0.92
USP39-215ENST00000481409 DNAJC9Q8WXX5 260 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 LRTOMTQ8WZ04 291 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 PSMF1Q92530 271 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 AGAP4Q96P64 663 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 PKP2Q99959 881 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 PSD2Q9BQI7 771 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 ING2Q9H160 280 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 C12orf10Q9HB07 376 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 TMEM27Q9HBJ8 222 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 SH2D2AQ9NP31 389 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 DNAJB12Q9NXW2 375 aaKnown RBP9.32□□□□□ -0.92
USP39-215ENST00000481409 STMN3Q9NZ72 180 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 CHST2Q9Y4C5 530 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 V9GYQ6 96 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 SPEGQ15772 3267 aa9.32□□□□□ -0.92
USP39-215ENST00000481409 hCG_2039718K7EN88 272 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 CEACAM4O75871 244 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 ANGPTL1O95841 491 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 H1F0P07305 194 aaKnown RBP9.31□□□□□ -0.92
USP39-215ENST00000481409 PGCP20142 388 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 VHLP40337 213 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 EIF2S3P41091 472 aaKnown RBP9.31□□□□□ -0.92
USP39-215ENST00000481409 SOX3P41225 446 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 CASP3P42574 277 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 OR1E2P47887 323 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 P2RX1P51575 399 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 MAP2K6P52564 334 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 ZNF136P52737 540 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 FBXW4P57775 412 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 EPS8Q12929 822 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 SKP2Q13309 424 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 CBFBQ13951 182 aa9.31□□□□□ -0.92
USP39-215ENST00000481409 OGFRL1Q5TC84 451 aaPredicted RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms