RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 LINC01387J3KSC0 135 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 SIAH2O43255 324 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 SERPINE1P05121 402 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 CRHP06850 196 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 NID1P14543 1247 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 PRPS1L1P21108 318 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 CCT3P49368 545 aaKnown RBP12.67□□□□□ -0.38
UPF3A-204ENST00000475218 PRIM2P49643 509 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 ABCE1P61221 599 aaKnown RBP12.67□□□□□ -0.38
UPF3A-204ENST00000475218 POU6F2P78424 691 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-204ENST00000475218 EMX2Q04743 252 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 FAM27E3Q08E93 113 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 PON3Q15166 354 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 PDCD2Q16342 344 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-204ENST00000475218 CLECL1Q8IZS7 167 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 GTPBP8Q8N3Z3 284 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-204ENST00000475218 SMPDL3BQ92485 455 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 JADE3Q92613 823 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 SH3YL1Q96HL8 342 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-204ENST00000475218 PPP1R36Q96LQ0 422 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 ZIM3Q96PE6 472 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 OPN3Q9H1Y3 402 aaPredicted RBP12.67□□□□□ -0.38
UPF3A-204ENST00000475218 ACBD3Q9H3P7 528 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 AKTIPQ9H8T0 292 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 GIN1Q9NXP7 522 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 FAM53CQ9NYF3 392 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 HAO1Q9UJM8 370 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF175Q9Y473 711 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 A0A1W2PQD3 144 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 MSTNO14793 375 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 ANKRD28O15084 1053 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 BIRC5O15392 142 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 RGS16O15492 202 aaPredicted RBP12.66□□□□□ -0.38
UPF3A-204ENST00000475218 EFNA2O43921 213 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 SCN2BO60939 215 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 HSPA4LO95757 839 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 OPN1LWP04000 364 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 HRGP04196 525 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 LINGO3P0C6S8 592 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF17P17021 662 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 SHC1P29353 583 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 LCN1P31025 176 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 RPL3P39023 403 aaKnown RBP12.66□□□□□ -0.38
UPF3A-204ENST00000475218 CLDN8P56748 225 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 SIRPAP78324 504 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 PHC1P78364 1004 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 KLHL26Q53HC5 615 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 CBLN3Q6UW01 205 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 C22orf34Q6ZV56 151 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 CLEC4FQ8N1N0 589 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 OR5AK3PQ8NH89 298 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 NINJ1Q92982 152 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 ACTRT3Q9BYD9 372 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 BHLHE41Q9C0J9 482 aaPredicted RBP12.66□□□□□ -0.38
UPF3A-204ENST00000475218 PLEKHA6Q9Y2H5 1048 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 TESMINQ9Y4I5 508 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 SH3D21A4FU49 640 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 C1QCP02747 245 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 BGNP21810 368 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 CPA2P48052 419 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 RPS26P62854 115 aaKnown RBP12.66□□□□□ -0.38
UPF3A-204ENST00000475218 OCRLQ01968 901 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF117Q03924 483 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 TP53BP2Q13625 1128 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 NDUFAF6Q330K2 333 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 OR2A2Q6IF42 318 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 OLIG3Q7RTU3 272 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 P4HA3Q7Z4N8 544 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 CNEP1R1Q8N9A8 125 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 OR5D16Q8NGK9 328 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 SFXN5Q8TD22 340 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 ACTRT2Q8TDY3 377 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 PGM2Q96G03 612 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 RNF145Q96MT1 663 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 DACH2Q96NX9 599 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 FOXC2Q99958 501 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 DUSP26Q9BV47 211 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 ATAD3AQ9NVI7 634 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 KCNE5Q9UJ90 142 aa12.66□□□□□ -0.38
UPF3A-204ENST00000475218 A0A087WZY1 265 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 CENPVL1A0A0U1RR11 272 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 SMNDC1O75940 238 aaKnown RBP eCLIP12.65□□□□□ -0.38
UPF3A-204ENST00000475218 CPOXP36551 454 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 PCYT1AP49585 367 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 EEFSECP57772 596 aaKnown RBP12.65□□□□□ -0.38
UPF3A-204ENST00000475218 EEF1A1P68104 462 aaKnown RBP12.65□□□□□ -0.38
UPF3A-204ENST00000475218 POU4F3Q15319 338 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 SMU1Q2TAY7 513 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 DCST2Q5T1A1 773 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 EEF1A1P5Q5VTE0 462 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 OR4F3Q6IEY1 312 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 PAMR1Q6UXH9 720 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF610Q8N9Z0 462 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 OR56A1Q8NGH5 318 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 OR7D2Q96RA2 312 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 NOP53Q9NZM5 478 aaKnown RBP12.65□□□□□ -0.38
UPF3A-204ENST00000475218 ICAM5Q9UMF0 924 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 EIF3LQ9Y262 564 aaKnown RBP12.65□□□□□ -0.38
UPF3A-204ENST00000475218 RAP2CQ9Y3L5 183 aa12.65□□□□□ -0.38
UPF3A-204ENST00000475218 HEATR5AQ86XA9 2040 aa12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms