RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 KLHL4Q9C0H6 718 aa9.45□□□□□ -0.9
PRPF38A-202ENST00000474048 CCDC86Q9H6F5 360 aaKnown RBP9.45□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF556Q9HAH1 456 aa9.45□□□□□ -0.9
PRPF38A-202ENST00000474048 AGPAT4Q9NRZ5 378 aa9.45□□□□□ -0.9
PRPF38A-202ENST00000474048 FBXO34Q9NWN3 711 aa9.45□□□□□ -0.9
PRPF38A-202ENST00000474048 PPP4R1LQ9P1A2 415 aa9.45□□□□□ -0.9
PRPF38A-202ENST00000474048 CNOT1A5YKK6 2376 aaKnown RBP9.45□□□□□ -0.9
PRPF38A-202ENST00000474048 CDHR4A6H8M9 788 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CPSF4LA6NMK7 179 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 G3V2T6 193 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 HCRTR2O43614 444 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 UGT2B11O75310 529 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 DIRAS1O95057 198 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 H1F0P07305 194 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 NGFRP08138 427 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CELA2AP08217 269 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 FBXO45P0C2W1 286 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 LINGO3P0C6S8 592 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CDH2P19022 906 aaPredicted RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 DNAJA1P31689 397 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 IFNGR2P38484 337 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 SOX3P41225 446 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 YAP1P46937 504 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 PTDSS1P48651 473 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 MASP1P48740 699 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CYB561P49447 251 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 RNF144AP50876 292 aaPredicted RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 FBXW4P57775 412 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 MLF1P58340 268 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 EEF1A1P68104 462 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 C17orf67Q0P5P2 114 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 ST3GAL3Q11203 375 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CDC20Q12834 499 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 FOXD4Q12950 439 aaPredicted RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CBFBQ13951 182 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 GANABQ14697 944 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 NRF1Q16656 503 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 COLEC12Q5KU26 742 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 ACER2Q5QJU3 275 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 AGAP7PQ5VUJ5 663 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 FCRLBQ6BAA4 426 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CCDC81Q6ZN84 652 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 RTL4Q6ZR62 310 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 ZBTB49Q6ZSB9 765 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 ZAR1Q86SH2 424 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CYP4Z2PQ8N1L4 340 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CADM2Q8N3J6 435 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 LINC00471Q8N535 108 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 GPR32P1Q8NGA4 272 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 OR4C3Q8NH37 302 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 OR5K1Q8NHB7 308 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 ADAMTS17Q8TE56 1095 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 AGAP4Q96P64 663 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 EPYCQ99645 322 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 ARHGDIGQ99819 225 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CIB1Q99828 191 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 UTP23Q9BRU9 249 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 TACO1Q9BSH4 297 aaKnown RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 OSBPL11Q9BXB4 747 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 TRIM2Q9C040 744 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 AMBRA1Q9C0C7 1298 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 RLIMQ9NVW2 624 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 NKX1-2Q9UD57 310 aaPredicted RBP9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 RIMS3Q9UJD0 308 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 U3KQV3 271 aa9.44□□□□□ -0.9
PRPF38A-202ENST00000474048 CEP250Q9BV73 2442 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 ALG1L2C9J202 215 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 FRS3O43559 492 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 EIF4E2O60573 245 aaKnown RBP9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 FMO6PO60774 539 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 CCNB2O95067 398 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 ZIC2O95409 532 aaPredicted RBP9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 ANGPTL1O95841 491 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 SEMG1P04279 462 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 PGCP20142 388 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 FPR1P21462 350 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 RYKP34925 604 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 HSPA13P48723 471 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF41P51814 821 aaPredicted RBP9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 CRYBA2P53672 197 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 IL1RL1Q01638 556 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 TRAM2Q15035 370 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 TAF11Q15544 211 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 MAPK14Q16539 360 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 NTRK2Q16620 822 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 CRTC2Q53ET0 693 aaPredicted RBP9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 KLHL26Q53HC5 615 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 ENTPD8Q5MY95 495 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 DCST1Q5T197 706 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 OTUD3Q5T2D3 398 aaPredicted RBP9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 SLC22A10Q63ZE4 541 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 C16orf47Q6ZP98 133 aaPredicted RBP9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 STK32CQ86UX6 486 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 GRAMD2AQ8IUY3 354 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 CLIP4Q8N3C7 705 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 GALNT16Q8N428 558 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 ATG16L2Q8NAA4 619 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 OR4K17Q8NGC6 315 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 OR6T1Q8NGN1 323 aa9.43□□□□□ -0.9
PRPF38A-202ENST00000474048 OR52J3Q8NH60 311 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms