RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 LPAR4Q99677 370 aa8.65□□□□□ -1.02
VPS52-216ENST00000471309 APOL4Q9BPW4 351 aa8.65□□□□□ -1.02
VPS52-216ENST00000471309 YTHDF1Q9BYJ9 559 aaKnown RBP8.65□□□□□ -1.02
VPS52-216ENST00000471309 ING2Q9H160 280 aa8.65□□□□□ -1.02
VPS52-216ENST00000471309 AKIRIN1Q9H9L7 192 aaPredicted RBP8.65□□□□□ -1.02
VPS52-216ENST00000471309 CTPS2Q9NRF8 586 aa8.65□□□□□ -1.02
VPS52-216ENST00000471309 UBQLN4Q9NRR5 601 aa8.65□□□□□ -1.02
VPS52-216ENST00000471309 PISDQ9UG56 409 aa8.65□□□□□ -1.02
VPS52-216ENST00000471309 ZNF223Q9UK11 482 aaPredicted RBP8.65□□□□□ -1.02
VPS52-216ENST00000471309 NDRG4Q9ULP0 352 aaKnown RBP8.65□□□□□ -1.02
VPS52-216ENST00000471309 SLC35A3Q9Y2D2 325 aa8.65□□□□□ -1.02
VPS52-216ENST00000471309 A0A1W2PQ72 361 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 TRIM64A6NGJ6 449 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 EIF4E1BA6NMX2 242 aaKnown RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 PLD2O14939 933 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 TSPAN2O60636 221 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 BCAS1O75363 584 aaPredicted RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 KLF7O75840 302 aaPredicted RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 DKK1O94907 266 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 GASTP01350 101 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 THY1P04216 161 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 NGFRP08138 427 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 SMIM18P0DKX4 95 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 CYP4B1P13584 511 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 TBXA2RP21731 343 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 IL12BP29460 328 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 KRT20P35900 424 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 IFNGR2P38484 337 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 FOLR3P41439 243 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 PNLIPRP2P54317 469 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 ISL1P61371 349 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 HOXC5Q00444 222 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 PLCXD2Q0VAA5 305 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 RAPSNQ13702 412 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 APOFQ13790 326 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 TRIP6Q15654 476 aaKnown RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 KLHL26Q53HC5 615 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 HES3Q5TGS1 186 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 STPG1Q5TH74 334 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 FNDC7Q5VTL7 733 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 C1orf94Q6P1W5 598 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 FAM199XQ6PEV8 388 aaPredicted RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 ZNF613Q6PF04 617 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 KLHL17Q6TDP4 642 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 CD300LDQ6UXZ3 194 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 HSDL2Q6YN16 418 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 ZNF550Q7Z398 422 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 ZNF440Q8IYI8 595 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 ZNF786Q8N393 782 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 OR2Y1Q8NGV0 311 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 OR4C3Q8NH37 302 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 ACOT11Q8WXI4 607 aaPredicted RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 GTPBP3Q969Y2 492 aaKnown RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 SLC41A3Q96GZ6 507 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 ZNF559Q9BR84 538 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 MESP1Q9BRJ9 268 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 PRR14Q9BWN1 585 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 UCK2Q9BZX2 261 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 EXOSC3Q9NQT5 275 aaKnown RBP8.64□□□□□ -1.03
VPS52-216ENST00000471309 GMPPBQ9Y5P6 360 aa8.64□□□□□ -1.03
VPS52-216ENST00000471309 A0A087WUU8 490 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 A0A0B4J2E0 115 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 TEX51A0A1B0GUA7 166 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 A0A1B0GX12 115 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 A0A1W2PQD3 144 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 C9orf172C9J069 976 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 SCDO00767 359 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 CHP2O43745 196 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 PRKNO60260 465 aaPredicted RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 SEC24DO94855 1032 aaPredicted RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 LYPD3O95274 346 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 UTS2O95399 124 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 CSTAP01040 98 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 IGHEP01854 428 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 UMODP07911 640 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 RAB40ALP0C0E4 278 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 GKN3PP0CG01 181 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 OSMP13725 252 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 HPGDP15428 266 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 GSTM3P21266 225 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 ABCD3P28288 659 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 EPHA2P29317 976 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 GGT2P36268 569 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 ACAA2P42765 397 aaKnown RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 RNF144AP50876 292 aaPredicted RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 NR0B1P51843 470 aaKnown RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 CLDN6P56747 220 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 NRG3P56975 720 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 ESRRGP62508 458 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 ALDH6A1Q02252 535 aaKnown RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 CD47Q08722 323 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 COX10Q12887 443 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 PCOLCEQ15113 449 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 OR1Q1Q15612 314 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 DHRS13Q6UX07 377 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 C6orf15Q6UXA7 325 aaPredicted RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 ZNF730Q6ZMV8 503 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 MBOAT2Q6ZWT7 520 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 LSMEM1Q8N8F7 131 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 OR5L2Q8NGL0 311 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms