RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ARFIP1P53367 373 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 OR1Q1Q15612 314 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 NNATQ16517 81 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 PGGHGQ32M88 737 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 LRIT3Q3SXY7 679 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 GDPGP1Q6ZNW5 385 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 OR9A4Q8NGU2 314 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 OSTF1Q92882 214 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 KCTD7Q96MP8 289 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 MMP28Q9H239 520 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 OR52D1Q9H346 318 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 TMEM165Q9HC07 324 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 PHF11Q9UIL8 331 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 TRAV27A0A087WT01 109 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 TNFSF14O43557 240 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 RDH16O75452 317 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 TBXA2RP21731 343 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 SLC16A1P53985 500 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 HTR4Q13639 388 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 DTX3Q8N9I9 347 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 PIGUQ9H490 435 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 MRPS18AQ9NVS2 196 aaKnown RBP17.73■□□□□ 0.43
VIM-203ENST00000469543 NTMQ9P121 344 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 C19orf53Q9UNZ5 99 aaPredicted RBP17.73■□□□□ 0.43
VIM-203ENST00000469543 CMAHPQ9Y471 501 aa17.73■□□□□ 0.43
VIM-203ENST00000469543 SIRT4Q9Y6E7 314 aaPredicted RBP17.73■□□□□ 0.43
VIM-203ENST00000469543 TMEM129A0AVI4 362 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 TMEM221A6NGB7 291 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 IL7P13232 177 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 IFI30P13284 250 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 IFNA8P32881 189 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 DUSP8Q13202 625 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 ADAM15Q13444 863 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 KLHL12Q53G59 568 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 AKAP14Q86UN6 197 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 FAM160A2Q8N612 972 aaPredicted RBP17.72■□□□□ 0.43
VIM-203ENST00000469543 CYB561A3Q8NBI2 242 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 OR2T33Q8NG76 320 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 SRRQ9GZT4 340 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 IL21RQ9HBE5 538 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 SIDT1Q9NXL6 827 aaKnown RBP17.72■□□□□ 0.43
VIM-203ENST00000469543 APBB3O95704 486 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 GYPBP06028 91 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 ILF3Q12906 894 aaKnown RBP eCLIP17.72■□□□□ 0.43
VIM-203ENST00000469543 TPBGQ13641 420 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 PRICKLE4Q2TBC4 344 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 VASNQ6EMK4 673 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 ABHD13Q7L211 337 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 CAMKVQ8NCB2 501 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 OR13C2Q8NGS9 318 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 TTTY10Q9BZA0 68 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 ZNF350Q9GZX5 532 aa17.72■□□□□ 0.43
VIM-203ENST00000469543 FABP12A6NFH5 140 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 STX11O75558 287 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 CSF2P04141 144 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 MRPL3P09001 348 aaKnown RBP17.71■□□□□ 0.43
VIM-203ENST00000469543 NOS3P29474 1203 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 MGAT2Q10469 447 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 Q6ZS52 159 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 BAHD1Q8TBE0 780 aaPredicted RBP17.71■□□□□ 0.43
VIM-203ENST00000469543 UFD1Q92890 307 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 SMAD5Q99717 465 aaKnown RBP17.71■□□□□ 0.43
VIM-203ENST00000469543 MEPEQ9NQ76 525 aaPredicted RBP17.71■□□□□ 0.43
VIM-203ENST00000469543 NLGN3Q9NZ94 848 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 MAT2BQ9NZL9 334 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 CDHR4A6H8M9 788 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 SLC30A4O14863 429 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 CASKO14936 926 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 OR5F1O95221 314 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 ST6GAL1P15907 406 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 LTBRP36941 435 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 STAT5AP42229 794 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.71■□□□□ 0.43
VIM-203ENST00000469543 DEFB119Q8N690 84 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 DNAJC5GQ8N7S2 189 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 RLN3Q8WXF3 142 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 CNOT9Q92600 299 aaKnown RBP17.71■□□□□ 0.43
VIM-203ENST00000469543 PTP4A1Q93096 173 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 TP53INP1Q96A56 240 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 RIPOR3Q96MK2 946 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 DTX4Q9Y2E6 619 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 COL6A3P12111 3177 aa17.71■□□□□ 0.43
VIM-203ENST00000469543 APEX1P27695 318 aaKnown RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 CASP3P42574 277 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 MAGEA8P43361 318 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 DEFA1P59665 94 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 DEFA3P59666 94 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 ARMC4Q5T2S8 1044 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 NCCRP1Q6ZVX7 275 aaPredicted RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 CXXC5Q7LFL8 322 aaKnown RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 TAF8Q7Z7C8 310 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 ZNF619Q8N2I2 560 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 CSNK1A1LQ8N752 337 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 ITPKCQ96DU7 683 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 TXNDC15Q96J42 360 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 TIMP4Q99727 224 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 OR51V1Q9H2C8 321 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 PPIL3Q9H2H8 161 aaKnown RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 SIAEQ9HAT2 523 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 PTGFRNQ9P2B2 879 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms