RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CNOT11Q9UKZ1 510 aaKnown RBP10.84□□□□□ -0.67
SQSTM1-206ENST00000466342 A0A0G2JNJ9 132 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 GXYLT2A0PJZ3 443 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 NPIPA2E9PIF3 369 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 NPIPA3F8WFD2 350 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 SYT5O00445 386 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 SMAD7O15105 426 aaKnown RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 SNX3O60493 162 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 HCN1O60741 890 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 KCNH1O95259 989 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 IL33O95760 270 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 GSNP06396 782 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 ZCCHC18P0CG32 403 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 ACVR2AP27037 513 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 CHI3L1P36222 383 aaPredicted RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 TRPC1P48995 793 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 MAN2A2P49641 1150 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 PSMD4P55036 377 aaKnown RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 RPS26P62854 115 aaKnown RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 KCNJ2P63252 427 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 MRPS22P82650 360 aaKnown RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 EFR3AQ14156 821 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 TBCELQ5QJ74 424 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 C6orf10Q5SRN2 563 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 PRAMEF20Q5VT98 475 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 DESI1Q6ICB0 168 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 TMEM81Q6P7N7 255 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 SLC2A7Q6PXP3 512 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 ZNF621Q6ZSS3 439 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 TRILQ7L0X0 811 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 CPLX4Q7Z7G2 160 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 COX18Q8N8Q8 333 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 MIPOL1Q8TD10 442 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 ADAMTS15Q8TE58 950 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 TSPEARQ8WU66 669 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 GTF2H4Q92759 462 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 DIO2Q92813 273 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 CDS1Q92903 461 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 EFHD2Q96C19 240 aaPredicted RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 TMCO6Q96DC7 493 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 OTUB1Q96FW1 271 aaPredicted RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 OR7D2Q96RA2 312 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 ADOQ96SZ5 270 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 SERHL2Q9H4I8 314 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 PROK2Q9HC23 129 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 ZFP64Q9NPA5 681 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 SAR1AQ9NR31 198 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 QPCTLQ9NXS2 382 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 Q9UFV3 132 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 BOKQ9UMX3 212 aaPredicted RBP10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 CUBNO60494 3623 aa10.83□□□□□ -0.68
SQSTM1-206ENST00000466342 A0A096LPI6 279 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 A0A1W2PP18 115 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 DUXAA6NLW8 204 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 FIGNL2A6NMB9 653 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 AQP7O14520 342 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 KCNK2O95069 426 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 ANP32DO95626 131 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 GLI4P10075 376 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 MATN1P21941 496 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 PTPN6P29350 595 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 KHKP50053 298 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 POU6F2P78424 691 aaPredicted RBP10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 KLF10Q13118 480 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 Q5PR19 223 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 LRIF1Q5T3J3 769 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 ANGPTL8Q6UXH0 198 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 P3H2Q8IVL5 708 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 OR5D16Q8NGK9 328 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 FAM110BQ8TC76 370 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 ZFP90Q8TF47 636 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 RNF138Q8WVD3 245 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 TMEM158Q8WZ71 300 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 SARAFQ96BY9 339 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 NODALQ96S42 347 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 DOHHQ9BU89 302 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 BTBD2Q9BX70 525 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 ANGPTL4Q9BY76 406 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 NMUR2Q9GZQ4 415 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 PAIP1Q9H074 479 aaKnown RBP10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 OR51I1Q9H343 314 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 LDAHQ9H6V9 325 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 METTL7AQ9H8H3 244 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 ACKR4Q9NPB9 350 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 SLC6A13Q9NSD5 602 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 LEF1Q9UJU2 399 aaPredicted RBP10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 NDUFAF1Q9Y375 327 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 PCDHGB3Q9Y5G1 929 aa10.82□□□□□ -0.68
SQSTM1-206ENST00000466342 FREM3P0C091 2139 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 TRGV5A0A0B4J1U4 118 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 PRAMEF25A6NGN4 478 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 SLC22A2O15244 555 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 CCDC22O60826 627 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 WDR1O75083 606 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 ICOSLGO75144 302 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 SNX4O95219 450 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 KRT75O95678 551 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 F12P00748 615 aaPredicted RBP10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 IGKV1D-16P01601 117 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms