RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 C2orf74A8MZ97 194 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SGK494L7N484 410 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 PLOD3O60568 738 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 GPR75O95800 540 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 DBIP07108 87 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 IL7P13232 177 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 NID1P14543 1247 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 CELP19835 753 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 RPS4Y1P22090 263 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 HTR1FP30939 366 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 AKT2P31751 481 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 GABRA3P34903 492 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 RFX3P48380 749 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 VSX2P58304 361 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MGAT2Q10469 447 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SRSF5Q13243 272 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 DSG2Q14126 1118 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 TAB1Q15750 504 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 LRIT3Q3SXY7 679 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 GLYR1Q49A26 553 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 EIPR1Q53HC9 387 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 EXOSC6Q5RKV6 272 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 PLBD1Q6P4A8 553 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ZC3H14Q6PJT7 736 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 FAM131AQ6UXB0 335 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 DGAT2L6Q6ZPD8 337 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 NCCRP1Q6ZVX7 275 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 CXXC5Q7LFL8 322 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ZAR1Q86SH2 424 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 OR51G2Q8NGK0 314 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SPRYD4Q8WW59 207 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 DIRAS2Q96HU8 199 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MCOLN1Q9GZU1 580 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MED17Q9NVC6 651 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 SIDT1Q9NXL6 827 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MAT2BQ9NZL9 334 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 H2AFY2Q9P0M6 372 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 MSRAQ9UJ68 235 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF223Q9UK11 482 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 POU2F3Q9UKI9 436 aa8.31□□□□□ -1.08
SYNE1-217ENST00000466159 EXOGQ9Y2C4 368 aaKnown RBP8.31□□□□□ -1.08
SYNE1-217ENST00000466159 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 A0A1W2PQ09 198 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CDHR4A6H8M9 788 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 SYNDIG1LA6NDD5 238 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 UNC119BA6NIH7 251 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 GALR3O60755 368 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 LYPD3O95274 346 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 HMGN1P05114 100 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 IFI30P13284 250 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 GABRG2P18507 467 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CASP3P42574 277 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 RFX2P48378 723 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 YPEL5P62699 121 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 PLAURQ03405 335 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 FZD5Q13467 585 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 KCNJ8Q15842 424 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 DEFB110Q30KQ9 67 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CD200R1LQ6Q8B3 271 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CA13Q8N1Q1 262 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CSNK1A1LQ8N752 337 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CDRT4Q8N9R6 151 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 TOR1AIP2Q8NFQ8 470 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 SLC37A2Q8TED4 501 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 HMGB4Q8WW32 186 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 TMEM239Q8WW34 195 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 TMCO6Q96DC7 493 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 GAS2L1Q99501 681 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 MED18Q9BUE0 208 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 HCAR1Q9BXC0 346 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 ISG20L2Q9H9L3 353 aaKnown RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 FAM60AQ9NP50 221 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 DUSP22Q9NRW4 184 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 TNFRSF10DQ9UBN6 386 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 GSTK1Q9Y2Q3 226 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 A0A0C4DFX4 3053 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 A0A087WV62 115 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 SHISA3A0PJX4 238 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 FABP12A6NFH5 140 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 AGRPO00253 132 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CASKO14936 926 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 NCR1O76036 304 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 TNFP01375 233 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 IGHA1P01876 353 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 TYRP1P17643 537 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 DRD1P21728 446 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 FGF9P31371 208 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 SSTR4P31391 388 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 NKX2-5P52952 324 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 MRPS21P82921 87 aaKnown RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 C1orf61Q13536 156 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 ARMC4Q5T2S8 1044 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 VASNQ6EMK4 673 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 RNF44Q7L0R7 432 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 KLBQ86Z14 1044 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 KLHL36Q8N4N3 616 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 ARIH2OSQ8N7S6 290 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 FANK1Q8TC84 345 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 GPBAR1Q8TDU6 330 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 ANKRD9Q96BM1 317 aaPredicted RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms