RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 AQP8O94778 261 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 HMGN2P05204 90 aaKnown RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 CCKARP32238 428 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 EIF1AXP47813 144 aaKnown RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 KCNJ5P48544 419 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ZNF41P51814 821 aaPredicted RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 POU6F2P78424 691 aaPredicted RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 PLPPR5Q32ZL2 321 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ATP6AP1LQ52LC2 224 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ESPNLQ6ZVH7 1005 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 MTERF4Q7Z6M4 381 aaKnown RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ZAR1Q86SH2 424 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ZNF610Q8N9Z0 462 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 OR6K3Q8NGY3 331 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 FBXO30Q8TB52 745 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 OR5P2Q8WZ92 322 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 GMPPAQ96IJ6 420 aaPredicted RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 PIP5K1AQ99755 562 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 MECRQ9BV79 373 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 HOXD1Q9GZZ0 328 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 GLRX2Q9NS18 164 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ZCCHC3Q9NUD5 404 aaKnown RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ATAD3AQ9NVI7 634 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 FBXO34Q9NWN3 711 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 KLHL28Q9NXS3 571 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 SLC17A7Q9P2U7 560 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 MCTS1Q9ULC4 181 aaKnown RBP12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 EMC9Q9Y3B6 208 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 ROS1P08922 2347 aa12.89□□□□□ -0.35
SNRNP40-203ENST00000463988 SIAH2O43255 324 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 GMFGO60234 142 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 SS18L1O75177 396 aaPredicted RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 PEX11AO75192 247 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 KRT16P08779 473 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 LAMP1P11279 417 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 PPP3CBP16298 524 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 ME2P23368 584 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 EIF1P41567 113 aaKnown RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 IFFO1Q0D2I5 559 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 CTU2Q2VPK5 515 aaKnown RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 LSM12Q3MHD2 195 aaKnown RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 C6orf136Q5SQH8 315 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 PDSS1Q5T2R2 415 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 SHEQ5VZ18 495 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 GALNT10Q86SR1 603 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 CXorf67Q86X51 503 aaPredicted RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 OR7A2PQ8NGA2 310 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 OR56A1Q8NGH5 318 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 OR10D3Q8NH80 312 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 B4GALNT2Q8NHY0 566 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 TCP10LQ8TDR4 215 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 JADE3Q92613 823 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 PIGTQ969N2 578 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 MOAP1Q96BY2 351 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 COQ8BQ96D53 544 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 POM121Q96HA1 1249 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 MARK4Q96L34 752 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 PRPF18Q99633 342 aaKnown RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 PRRG4Q9BZD6 226 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 FANCFQ9NPI8 374 aa12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 C6orf203Q9P0P8 240 aaPredicted RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 NSD1Q96L73 2696 aaPredicted RBP12.88□□□□□ -0.35
SNRNP40-203ENST00000463988 VPS13CQ709C8 3753 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 SPAG7O75391 227 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 SLU7O95391 586 aaKnown RBP12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 SYNGR4O95473 234 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 PLGP00747 810 aaPredicted RBP12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 LINGO3P0C6S8 592 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 EFNA1P20827 205 aaPredicted RBP12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 PRPS1L1P21108 318 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 FPR1P21462 350 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 ARRB2P32121 409 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 SLC6A8P48029 635 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 CCT3P49368 545 aaKnown RBP12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 CTBP2P56545 445 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 LASP1Q14847 261 aaKnown RBP12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 PTGR1Q14914 329 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 CCNJQ5T5M9 372 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 GTF2IRD2BQ6EKJ0 949 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 CDC73Q6P1J9 531 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 GTF2IRD2Q86UP8 949 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 RIMKLAQ8IXN7 391 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 LRRC75A-AS1Q8N1F1 130 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 GATSQ8NAP1 163 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 ZNF527Q8NB42 609 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 WFDC11Q8NEX6 87 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 OR2V1Q8NHB1 315 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 SFXN5Q8TD22 340 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 CDS1Q92903 461 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 C3orf30Q96M34 536 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 RNF145Q96MT1 663 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 ACTRT3Q9BYD9 372 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 GPATCH2Q9NW75 528 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 GIMAP2Q9UG22 337 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 FAF1Q9UNN5 650 aaPredicted RBP12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 SNX8Q9Y5X2 465 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 ACTL7BQ9Y614 415 aa12.87□□□□□ -0.35
SNRNP40-203ENST00000463988 NUP214P35658 2090 aaPredicted RBP12.86□□□□□ -0.35
SNRNP40-203ENST00000463988 A0A0J9YW62 118 aa12.86□□□□□ -0.35
SNRNP40-203ENST00000463988 H3BNH8 94 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms