RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 OR4C3Q8NH37 302 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 FAM110BQ8TC76 370 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 ADAMTS15Q8TE58 950 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 MOAP1Q96BY2 351 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 SH3YL1Q96HL8 342 aaPredicted RBP12.56□□□□□ -0.4
USP4-206ENST00000461553 ZNF845Q96IR2 970 aaPredicted RBP12.56□□□□□ -0.4
USP4-206ENST00000461553 ZIM3Q96PE6 472 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 ACTRT3Q9BYD9 372 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 PRRG4Q9BZD6 226 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 BHLHE41Q9C0J9 482 aaPredicted RBP12.56□□□□□ -0.4
USP4-206ENST00000461553 PIGUQ9H490 435 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 RNF122Q9H9V4 155 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 GIN1Q9NXP7 522 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 NDRG3Q9UGV2 375 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 ZFHX3Q15911 3703 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 VPS13CQ709C8 3753 aa12.56□□□□□ -0.4
USP4-206ENST00000461553 WDR91A4D1P6 747 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 C7orf72A4D263 438 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 TM9SF1O15321 606 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 RAF1P04049 648 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 ME2P23368 584 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 EIF1AXP47813 144 aaKnown RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 CCT3P49368 545 aaKnown RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 RIPPLY3P57055 190 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 POU4F3Q15319 338 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 CHI3L2Q15782 390 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 TMEM44Q2T9K0 475 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 PLPPR5Q32ZL2 321 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 EXOSC6Q5RKV6 272 aaKnown RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 DCST2Q5T1A1 773 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 BHLHB9Q6PI77 547 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 GGNQ86UU5 652 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 WDR75Q8IWA0 830 aaKnown RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 KIRREL3Q8IZU9 778 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 B4GALNT2Q8NHY0 566 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 PSMA8Q8TAA3 256 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 ACTRT2Q8TDY3 377 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 STARD4Q96DR4 205 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 PGM2Q96G03 612 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 DUSP26Q9BV47 211 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 OPN3Q9H1Y3 402 aaPredicted RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 CENPHQ9H3R5 247 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 LIME1Q9H400 295 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 CXorf36Q9H7Y0 433 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 SSU72Q9NP77 194 aaKnown RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 MED17Q9NVC6 651 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 PAQR5Q9NXK6 330 aaPredicted RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 MCTS1Q9ULC4 181 aaKnown RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 PROCRQ9UNN8 238 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 TESMINQ9Y4I5 508 aa12.55□□□□□ -0.4
USP4-206ENST00000461553 SETD2Q9BYW2 2564 aaPredicted RBP12.55□□□□□ -0.4
USP4-206ENST00000461553 H3BNH8 94 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 CASKO14936 926 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 BIRC5O15392 142 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 SOX30O94993 753 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 SNUPNO95149 360 aaKnown RBP12.54□□□□□ -0.4
USP4-206ENST00000461553 NUDT14O95848 222 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 PLGP00747 810 aaPredicted RBP12.54□□□□□ -0.4
USP4-206ENST00000461553 MYZAPP0CAP1 466 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 G6PDP11413 515 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 POU2F1P14859 743 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 CD79BP40259 229 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 KIR2DL2P43627 348 aaPredicted RBP12.54□□□□□ -0.4
USP4-206ENST00000461553 KCNJ5P48544 419 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 C21orf58P58505 322 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 ABCE1P61221 599 aaKnown RBP12.54□□□□□ -0.4
USP4-206ENST00000461553 CD226Q15762 336 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 SMU1Q2TAY7 513 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 CAMKMTQ7Z624 323 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 BTLAQ7Z6A9 289 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 MTERF4Q7Z6M4 381 aaKnown RBP12.54□□□□□ -0.4
USP4-206ENST00000461553 ZNF614Q8N883 585 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 ZNF781Q8N8C0 355 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 OR10D3Q8NH80 312 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 OR5AK3PQ8NH89 298 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 PHOSPHO1Q8TCT1 267 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 COQ8BQ96D53 544 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 PPP1R36Q96LQ0 422 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 RNF145Q96MT1 663 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 ALPK1Q96QP1 1244 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 SLC39A3Q9BRY0 314 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 CXXC4Q9H2H0 198 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 TMEM185BQ9H7F4 350 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 GPATCH2Q9NW75 528 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 FBXO34Q9NWN3 711 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 ASIC5Q9NY37 505 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 EMC9Q9Y3B6 208 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 ACANP16112 2415 aa12.54□□□□□ -0.4
USP4-206ENST00000461553 ARID1AO14497 2285 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 NPIPA5A0A0B4J1W7 369 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 NPIPA7E9PJI5 369 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 ITM2AO43736 263 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 SYNGR4O95473 234 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 HRGP04196 525 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 NPIPA8P0DM63 369 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 CD8BP10966 210 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 ELK4P28324 431 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 PCYT1AP49585 367 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 SUMO3P55854 103 aaPredicted RBP12.53□□□□□ -0.4
USP4-206ENST00000461553 CLDN8P56748 225 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms