RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CCDC153Q494R4 210 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 FAM219BQ5XKK7 198 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 ADAM5Q6NVV9 412 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 ZYG11AQ6WRX3 759 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 GALNT10Q86SR1 603 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 CEP112Q8N8E3 955 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 CCDC63Q8NA47 563 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 ZNF527Q8NB42 609 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 B4GALNT2Q8NHY0 566 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 FAM110BQ8TC76 370 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 RNF145Q96MT1 663 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 TMEM204Q9BSN7 226 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 REEP4Q9H6H4 257 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 C12orf49Q9H741 205 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 LRTM1Q9HBL6 345 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 GP6Q9HCN6 339 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 ACSS1Q9NUB1 689 aaPredicted RBP11.88□□□□□ -0.51
HMGB3-204ENST00000448905 MED17Q9NVC6 651 aa11.88□□□□□ -0.51
HMGB3-204ENST00000448905 PSMC3IPQ9P2W1 217 aaPredicted RBP11.88□□□□□ -0.51
HMGB3-204ENST00000448905 MED12Q93074 2177 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 A0A1W2PQD3 144 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 RIPK2O43353 540 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 GLRA3O75311 464 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 CRLF1O75462 422 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 KCNK2O95069 426 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 NUDT14O95848 222 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 IFNA2P01563 188 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 CD3EP07766 207 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 ATP6V1C1P21283 382 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 ADH6P28332 368 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 GCAP28676 217 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 TNK1Q13470 666 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 CAPRIN1Q14444 709 aaKnown RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 P2RY6Q15077 328 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 CLEC12BQ2HXU8 276 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 PLPPR5Q32ZL2 321 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 MFSD12Q6NUT3 480 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 FIGNL1Q6PIW4 674 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 R3HCC1LQ7Z5L2 792 aaKnown RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 MTERF4Q7Z6M4 381 aaKnown RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 SLC43A2Q8N370 569 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 COX18Q8N8Q8 333 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 GATSQ8NAP1 163 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 NOA1Q8NC60 698 aaKnown RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 SLC16A11Q8NCK7 471 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 IGFBPL1Q8WX77 278 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 HOXB13Q92826 284 aaPredicted RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 CPNE4Q96A23 557 aaPredicted RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 CHMP6Q96FZ7 201 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 ZNF764Q96H86 408 aaPredicted RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 SH3YL1Q96HL8 342 aaPredicted RBP11.87□□□□□ -0.51
HMGB3-204ENST00000448905 ADGRG7Q96K78 797 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 EGLN2Q96KS0 407 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 KLHL15Q96M94 604 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 MS4A4EQ96PG1 132 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 L2HGDHQ9H9P8 463 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 FBXO34Q9NWN3 711 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 NTMQ9P121 344 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 TBK1Q9UHD2 729 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 RNF115Q9Y4L5 304 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 DOCK7Q96N67 2140 aa11.87□□□□□ -0.51
HMGB3-204ENST00000448905 A0A0J9YW62 118 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 G3V2L1 256 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 GTPBP1O00178 669 aaKnown RBP11.86□□□□□ -0.51
HMGB3-204ENST00000448905 ZNF195O14628 629 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 CLOCKO15516 846 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 AKAP10O43572 662 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 TBX19O60806 448 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 PLAUP00749 431 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 YES1P07947 543 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 CPA3P15088 417 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 PRPH2P23942 346 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 ECHS1P30084 290 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 AGTR1P30556 359 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 MAP3K8P41279 467 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 ASMTP46597 345 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 POU6F2P78424 691 aaPredicted RBP11.86□□□□□ -0.51
HMGB3-204ENST00000448905 VEZF1Q14119 521 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 KIAA0040Q15053 153 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 SFRP5Q5T4F7 317 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 HEPHL1Q6MZM0 1159 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 LRIG3Q6UXM1 1119 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 FRMD7Q6ZUT3 714 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 SSX8Q7RTT4 187 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 SMAP2Q8WU79 429 aaPredicted RBP11.86□□□□□ -0.51
HMGB3-204ENST00000448905 ROBO4Q8WZ75 1007 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 JADE3Q92613 823 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 KISS1RQ969F8 398 aaPredicted RBP11.86□□□□□ -0.51
HMGB3-204ENST00000448905 FBXW5Q969U6 566 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 S100PBPQ96BU1 408 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 MTERF3Q96E29 417 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 C16orf45Q96MC5 204 aaPredicted RBP11.86□□□□□ -0.51
HMGB3-204ENST00000448905 CCT7Q99832 543 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 BTBD2Q9BX70 525 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 TMEM185BQ9H7F4 350 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 TMED5Q9Y3A6 229 aa11.86□□□□□ -0.51
HMGB3-204ENST00000448905 NEFHP12036 1026 aa11.85□□□□□ -0.51
HMGB3-204ENST00000448905 PSMA4P25789 261 aaKnown RBP11.85□□□□□ -0.51
HMGB3-204ENST00000448905 ELK4P28324 431 aa11.85□□□□□ -0.51
HMGB3-204ENST00000448905 SFTPDP35247 375 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms