RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GTPBP8Q8N3Z3 284 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 COX18Q8N8Q8 333 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 ZNF610Q8N9Z0 462 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 OR4C3Q8NH37 302 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 B4GALNT2Q8NHY0 566 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 FNDC9Q8TBE3 224 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 FAM110BQ8TC76 370 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 FIG4Q92562 907 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 PIK3IP1Q96FE7 263 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 EGLN2Q96KS0 407 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 FCRL1Q96LA6 429 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 ROPN1BQ9BZX4 212 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 PIGUQ9H490 435 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 L2HGDHQ9H9P8 463 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 ROPN1Q9HAT0 212 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 EQTNQ9NQ60 294 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 DLL4Q9NR61 685 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 MKS1Q9NXB0 559 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 KLHL28Q9NXS3 571 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 FAF1Q9UNN5 650 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 VDAC3Q9Y277 283 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 GPR52Q9Y2T5 361 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 TRAF6Q9Y4K3 522 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 VPS13CQ709C8 3753 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 MTORP42345 2549 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 ZNF469Q96JG9 3925 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 A0A1W2PRB8 838 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 LSM1O15116 133 aaKnown RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 AKAP10O43572 662 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 DIAPH2O60879 1101 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 SS18L1O75177 396 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 NME6O75414 186 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 KCNK2O95069 426 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 OXSR1O95747 527 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 NUDT14O95848 222 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 AGR2O95994 175 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 CGAP01215 116 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 TUBBP07437 444 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 LINC00032P0C843 101 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 BCKDHAP12694 445 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 SDC1P18827 310 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 PRPS1L1P21108 318 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 ELK4P28324 431 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 CLDN20P56880 219 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 RPL38P63173 70 aaKnown RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 SIRPAP78324 504 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 POU6F2P78424 691 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 IFFO1Q0D2I5 559 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 POU4F3Q15319 338 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 GUSBP1Q15486 140 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 SMU1Q2TAY7 513 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 GALNTL6Q49A17 601 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 ATP6AP1LQ52LC2 224 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 BEX5Q5H9J7 111 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 TMEM201Q5SNT2 666 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 KANK2Q63ZY3 851 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 HBMQ6B0K9 141 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 CLEC6AQ6EIG7 209 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 PPP4R4Q6NUP7 873 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 MFSD12Q6NUT3 480 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 ZNF474Q6S9Z5 364 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 Q6ZSR9 355 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 PLEKHM3Q6ZWE6 761 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 C10orf107Q8IVU9 208 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 LILRA2Q8N149 483 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 SLC43A2Q8N370 569 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 SLC16A11Q8NCK7 471 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 STEAP2Q8NFT2 490 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 OR56A1Q8NGH5 318 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 OR2V1Q8NHB1 315 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 ADAMTS15Q8TE58 950 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 OIT3Q8WWZ8 545 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 OR5P2Q8WZ92 322 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 PIK3R3Q92569 461 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 JADE3Q92613 823 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 CPNE4Q96A23 557 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 CHMP6Q96FZ7 201 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 ZIM3Q96PE6 472 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 TSSK3Q96PN8 268 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 CCL19Q99731 98 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 GATA5Q9BWX5 397 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 ACTRT3Q9BYD9 372 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 KLHL4Q9C0H6 718 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 OPN3Q9H1Y3 402 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 ZNF395Q9H8N7 513 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 ZCCHC3Q9NUD5 404 aaKnown RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 C6orf203Q9P0P8 240 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 ATP6V1HQ9UI12 483 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 PCDHGB4Q9UN71 923 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 DNAJC15Q9Y5T4 150 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 ACTL7BQ9Y614 415 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 GPC6Q9Y625 555 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 NAV3Q8IVL0 2385 aa6.35□□□□□ -1.39
VPS41-208ENST00000448833 RAI1Q7Z5J4 1906 aaPredicted RBP6.35□□□□□ -1.39
VPS41-208ENST00000448833 ACANP16112 2415 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 TLDC2A0PJX2 215 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 GXYLT2A0PJZ3 443 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 SMIM23A6NLE4 172 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 DEFB108AA8MXU0 73 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 GTPBP1O00178 669 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms