RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 SCDO00767 359 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 CDC40O60508 579 aaKnown RBP eCLIP12.3□□□□□ -0.44
PRPF39-202ENST00000424478 ETS2P15036 469 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 EEF1A1P68104 462 aaKnown RBP12.3□□□□□ -0.44
PRPF39-202ENST00000424478 NPTX1Q15818 432 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 LRRC69Q6ZNQ3 347 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 CARM1Q86X55 608 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 C17orf47Q8NEP4 570 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 LRTOMTQ8WZ04 291 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 DOHHQ9BU89 302 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 AMBRA1Q9C0C7 1298 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 LRFN1Q9P244 771 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 OR6C70A6NIJ9 312 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 ADAM10O14672 748 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 GNB5O14775 395 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 ANGPTL1O95841 491 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 CSTAP01040 98 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 NID1P14543 1247 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 PNLIPRP2P54317 469 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 RRADP55042 308 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 GNA13Q14344 377 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 RCN1Q15293 331 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 TOMM34Q15785 309 aaPredicted RBP12.3□□□□□ -0.44
PRPF39-202ENST00000424478 KLHL26Q53HC5 615 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 AGAP7PQ5VUJ5 663 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 IRAK1BP1Q5VVH5 260 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 POMZP3Q6PJE2 187 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 C19orf48Q6RUI8 117 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 VPS50Q96JG6 964 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 AGAP4Q96P64 663 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 CHID1Q9BWS9 393 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 DEPPQ9NTK1 212 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 CALML5Q9NZT1 146 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 MED11Q9P086 117 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 PINLYPA6NC86 204 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 HCRTR2O43614 444 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 HS6ST1O60243 411 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 AK1P00568 194 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 LSM11P83369 360 aaKnown RBP eCLIP12.3□□□□□ -0.446e-6■□□□□ 8.3
PRPF39-202ENST00000424478 TUBA3CQ13748 450 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 TUBA3EQ6PEY2 450 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 LILRA2Q8N149 483 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 OR52J3Q8NH60 311 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 RNF217Q8TC41 542 aa12.3□□□□□ -0.44
PRPF39-202ENST00000424478 SAMD4AQ9UPU9 718 aaKnown RBP12.3□□□□□ -0.44
PRPF39-202ENST00000424478 ZNF407Q9C0G0 2248 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 RP1L1Q8IWN7 2480 aaPredicted RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 SERINC4A6NH21 518 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 CPSF4LA6NMK7 179 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 NDUFB5O43674 189 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 FADS1O60427 444 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 DBIP07108 87 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 C8BP07358 591 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 RPS4Y1P22090 263 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 PSMA4P25789 261 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 PTGDSP41222 190 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 CASP3P42574 277 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 ZNF117Q03924 483 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 PIN1Q13526 163 aaPredicted RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 NTRK2Q16620 822 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 MEX3DQ86XN8 651 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 PROX1Q92786 737 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 STMN2Q93045 179 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 MFRPQ9BY79 579 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 VNN3Q9NY84 501 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 DTNAQ9Y4J8 743 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 CDHR4A6H8M9 788 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 K7ENP7 123 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 NEURL1O76050 574 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 NUDT14O95848 222 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 FAM87AP0C7U9 286 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 CYB561P49447 251 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 PSMD4P55036 377 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 CACNA1BQ00975 2339 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 LARS2Q15031 903 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 SPATS1Q496A3 300 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 INO80CQ6PI98 192 aaPredicted RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 OPN5Q6U736 354 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 P3H2Q8IVL5 708 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 OR5M1Q8NGP8 315 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 ZNF354BQ96LW1 612 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 GNRHR2Q96P88 292 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 TRIM15Q9C019 465 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 PROK2Q9HC23 129 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 ZNF71Q9NQZ8 489 aaPredicted RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 DNAJB12Q9NXW2 375 aaKnown RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 DKK4Q9UBT3 224 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 RPS6KA6Q9UK32 745 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 SSUH2Q9Y2M2 353 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 TESMINQ9Y4I5 508 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 MAGED1Q9Y5V3 778 aaPredicted RBP12.29□□□□□ -0.44
PRPF39-202ENST00000424478 MPDZO75970 2070 aa12.29□□□□□ -0.44
PRPF39-202ENST00000424478 AQP12BA6NM10 295 aa12.28□□□□□ -0.44
PRPF39-202ENST00000424478 GTPBP1O00178 669 aaKnown RBP12.28□□□□□ -0.44
PRPF39-202ENST00000424478 FKBP6O75344 327 aa12.28□□□□□ -0.44
PRPF39-202ENST00000424478 PDE9AO76083 593 aa12.28□□□□□ -0.44
PRPF39-202ENST00000424478 TBXA2RP21731 343 aa12.28□□□□□ -0.44
PRPF39-202ENST00000424478 RGS8P57771 180 aaPredicted RBP12.28□□□□□ -0.44
PRPF39-202ENST00000424478 OR1C1Q15619 314 aa12.28□□□□□ -0.44
PRPF39-202ENST00000424478 ZNF141Q15928 474 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms