RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 DRC3Q9H069 523 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ADNPQ9H2P0 1102 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HIPK2Q9H2X6 1198 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 RHBGQ9H310 441 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ACTL8Q9H568 366 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 BRF2Q9HAW0 419 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ANKHQ9HCJ1 492 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 MKKSQ9NPJ1 570 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 C14orf105Q9NVL8 296 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 PSD3Q9NYI0 1048 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM216Q9P0N5 145 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 KIAA1456Q9P272 454 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 CPSF2Q9P2I0 782 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 HSPB7Q9UBY9 170 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF282Q9UDV7 671 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 GRID1Q9ULK0 1009 aa2.31□□□□□ -2.04
VPS13A-208ENST00000423463 PTRH2Q9Y3E5 179 aaKnown RBP2.31□□□□□ -2.04
VPS13A-208ENST00000423463 A0A0A6YYC8 382 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TEX13CA0A0J9YWL9 993 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 A0A1W2PPM1 405 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ARHGAP10A1A4S6 786 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 GAGE12JA6NER3 117 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 I3L1I5 382 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TIMM23O14925 209 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 LDLRAD4O15165 306 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 P2RX6O15547 441 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 GALR3O60755 368 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 GLRA3O75311 464 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ERLIN1O75477 346 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SERPIND1P05546 499 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 EPORP19235 508 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 IMPDH1P20839 514 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF10P21506 573 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MMP11P24347 488 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 DCTDP32321 178 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SLCO1A2P46721 670 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PDLIM4P50479 330 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ARFIP1P53367 373 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CLNS1AP54105 237 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 EMP2P54851 167 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 STXBP1P61764 594 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 IFFO1Q0D2I5 559 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 GTF2H2Q13888 395 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TBCEQ15813 527 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 DEFB109BQ30KR1 87 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ADPRMQ3LIE5 342 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 LINC00303Q3SY05 128 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CCDC153Q494R4 210 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SLC9B1Q4ZJI4 515 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM35AQ53FP2 167 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TOR1AIP1Q5JTV8 583 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RUSC1-AS1Q66K80 236 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 GTF2H2CQ6P1K8 395 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MED27Q6P2C8 311 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 COX15Q7KZN9 410 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ABHD13Q7L211 337 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 IQCKQ8N0W5 287 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 L3MBTL4Q8NA19 623 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF740Q8NDX6 193 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RDH11Q8TC12 318 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 UTP15Q8TED0 518 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CREB3L4Q8TEY5 395 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ATP6V1E2Q96A05 226 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM18Q96B42 140 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CCDC126Q96EE4 140 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MOCOSQ96EN8 888 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MMABQ96EY8 250 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 FER1L6-AS2Q96M78 137 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RUFY1Q96T51 708 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TBCDQ9BTW9 1192 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 NUF2Q9BZD4 464 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ROGDIQ9GZN7 287 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SPNS1Q9H2V7 528 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ACTR8Q9H981 624 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TRPC4Q9UBN4 977 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TBK1Q9UHD2 729 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 LGALS13Q9UHV8 139 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF490Q9ULM2 529 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 STK38LQ9Y2H1 464 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MRPS2Q9Y399 296 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MRPS18BQ9Y676 258 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MAU2Q9Y6X3 613 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 V9GYY5 206 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CFAP54Q96N23 3096 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CACNA1BQ00975 2339 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SDK2Q58EX2 2172 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 DMXL1Q9Y485 3027 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 LRIT2A6NDA9 550 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CBY3A6NI87 242 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SMIM23A6NLE4 172 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 A8MT66 165 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 H0YIV9 168 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MKRN2OSH3BPM6 223 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 H3BQF6 201 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 GOLGA8RI6L899 631 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 IFNL4K9M1U5 179 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 FOXE1O00358 373 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 E2F3O00716 465 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 COPEO14579 308 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 NDUFS4O43181 175 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms