RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OR5W2Q8NH69 310 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 RELTQ969Z4 430 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 SPATA5L1Q9BVQ7 753 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 TTTY12Q9BZ98 90 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 TUBA8Q9NY65 449 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 TESQ9UGI8 421 aaKnown RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 MAGEL2Q9UJ55 1249 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 USP24Q9UPU5 2620 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 MED13Q9UHV7 2174 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 TCRBV3S1A0A5B6 114 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 FCMRO60667 390 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ACTL6AO96019 429 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 NUDT7P0C024 238 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CHI3L1P36222 383 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 NCALDP61601 193 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CHRNEQ04844 493 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CEACAM7Q14002 265 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CD226Q15762 336 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CMPK2Q5EBM0 449 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ATAD3BQ5T9A4 648 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 NHLRC1Q6VVB1 395 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 TRILQ7L0X0 811 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 OR5AK3PQ8NH89 298 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 TAMM41Q96BW9 452 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF597Q96LX8 424 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 BBC3Q96PG8 261 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ALG2Q9H553 416 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 BOKQ9UMX3 212 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ANGPT4Q9Y264 503 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CSAG2Q9Y5P2 127 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 DMXL2Q8TDJ6 3036 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 A0A0G2JMM0 328 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CENPVL1A0A0U1RR11 272 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 A0A1W2PPB8 328 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 A0A1W2PRS3 328 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ELOVL7A1L3X0 281 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 WIPF3A6NGB9 483 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 KIR3DP1A8MWS1 328 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 HMGA2P52926 109 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 KCNJ10P78508 379 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF117Q03924 483 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 RABL3Q5HYI8 236 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 RNFT1Q5M7Z0 435 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 C1QTNF12Q5T7M4 302 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 GPR151Q8TDV0 419 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 WDR60Q8WVS4 1066 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF524Q96C55 264 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 C7orf34Q96L11 122 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 MRGPRX4Q96LA9 322 aa6.38□□□□□ -1.39
LIMA1-202ENST00000394943 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.38□□□□□ -1.39
LIMA1-202ENST00000394943 CFAP47Q6ZTR5 3102 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 LOC102725191A0A1B0GVB3 256 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ARRDC5A6NEK1 342 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 AQP12BA6NM10 295 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 KDELR2P33947 212 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 HTR3AP46098 478 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 MEOX1P50221 254 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SLC7A2P52569 658 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SELENOWP63302 87 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 LIPEQ05469 1076 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CRYZQ08257 329 aaKnown RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SPINK14Q6IE38 97 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 C5orf46Q6UWT4 87 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 C16orf47Q6ZP98 133 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 AQP12AQ8IXF9 295 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CLEC4FQ8N1N0 589 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF843Q8N446 348 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 GALNT11Q8NCW6 608 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CATSPER1Q8NEC5 780 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 AURKBQ96GD4 344 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 GP6Q9HCN6 339 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 WDR45Q9Y484 360 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 NCOA6Q14686 2063 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SPTBN4Q9H254 2564 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 GSC2O15499 205 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CDC40O60508 579 aaKnown RBP eCLIP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 DNAJC8O75937 253 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ANGPTL1O95841 491 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 IL12BP29460 328 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 PTGER1P34995 402 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 EIF1P41567 113 aaKnown RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 FOXK1P85037 733 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CTU2Q2VPK5 515 aaKnown RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SPDYE7PQ495Y7 208 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 NADK2Q4G0N4 442 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 FLYWCH1Q4VC44 716 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 VASNQ6EMK4 673 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF613Q6PF04 617 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ZPLD1Q8TCW7 415 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 RMND5BQ96G75 393 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-202ENST00000394943 C5orf34Q96MH7 638 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 SLC19A3Q9BZV2 496 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 AGRPO00253 132 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF264O43296 627 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 ADAM11O75078 769 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 RASAL1O95294 804 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 CBX6O95503 412 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 P04436 131 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 FAM87AP0C7U9 286 aa6.37□□□□□ -1.39
LIMA1-202ENST00000394943 UMPSP11172 480 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms