RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 NOS1APO75052 506 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 IL33O95760 270 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 PRKAR1BP31321 381 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ATP6V1E1P36543 226 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 SRP54P61011 504 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 CDK5Q00535 292 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 TNFRSF17Q02223 184 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ILF3Q12906 894 aaKnown RBP eCLIP9□□□□□ -0.97
COL6A3-204ENST00000392003 GPR68Q15743 365 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 TMEM44Q2T9K0 475 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ATAD3CQ5T2N8 411 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 LIPKQ5VXJ0 399 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 RNLSQ5VYX0 342 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 STEAP3Q658P3 488 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 TMEM65Q6PI78 240 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 COMTD1Q86VU5 262 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 MORN4Q8NDC4 146 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 OR52I1Q8NGK6 324 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 TMEM163Q8TC26 289 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 RFKQ969G6 155 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 RERGQ96A58 199 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 SCARF2Q96GP6 870 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 ARHGDIGQ99819 225 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 TAPBPLQ9BX59 468 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ANKRD19PQ9H560 264 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 MTHFD2LQ9H903 347 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 ANKRA2Q9H9E1 313 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 SMURF1Q9HCE7 757 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 MAN2C1Q9NTJ4 1040 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 SPIN1Q9Y657 262 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 SLC22A7Q9Y694 548 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 A0A1W2PQF6 199 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 A6NCN8 305 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 PRR19A6NJB7 356 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 OR6C65A6NJZ3 312 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 PTTG1O95997 202 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 HOXC4P09017 264 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 HNRNPA2B1P22626 353 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 DEFB134Q4QY38 66 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 EIPR1Q53HC9 387 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 SLC25A30Q5SVS4 291 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 C19orf48Q6RUI8 117 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 RASSF6Q6ZTQ3 369 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 SLC44A3Q8N4M1 653 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ZNF655Q8N720 491 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 OSTF1Q92882 214 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 RNFT2Q96EX2 444 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ZNF681Q96N22 645 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 EGLN3Q9H6Z9 239 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ZNF275Q9NSD4 429 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 SLC39A1Q9NY26 324 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 LSM2Q9Y333 95 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 EXOSC1Q9Y3B2 195 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 DOCK8Q8NF50 2099 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 A0A1W2PS29 197 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 CIB4A0PJX0 185 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 LEUTXA8MZ59 168 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 C2CD4DB7Z1M9 353 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 UBXN7O94888 489 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 APBB3O95704 486 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ACP2P11117 423 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 PSKH1P11801 424 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 CTSEP14091 401 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 STAT5AP42229 794 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 FOXK2Q01167 660 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 RAB40BQ12829 278 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 CLEC12AQ5QGZ9 265 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 TYW3Q6IPR3 259 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 CDC73Q6P1J9 531 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 FIGLAQ6QHK4 219 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ABHD13Q7L211 337 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 VN1R4Q7Z5H5 301 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 JAZF1Q86VZ6 243 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 MEX3DQ86XN8 651 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 NT5CQ8TCD5 201 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ACOT11Q8WXI4 607 aaPredicted RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 FAM46AQ96IP4 442 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 FCRL4Q96PJ5 515 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 PRR14Q9BWN1 585 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 ACTR6Q9GZN1 396 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 RERGLQ9H628 205 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 EVA1BQ9NVM1 165 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 CNIH4Q9P003 139 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 GSTK1Q9Y2Q3 226 aa9□□□□□ -0.97
COL6A3-204ENST00000392003 PCDHGA9Q9Y5G4 932 aaKnown RBP9□□□□□ -0.97
COL6A3-204ENST00000392003 ZNF670-ZNF695F2Z2N8 137 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 SLC30A4O14863 429 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 SEMA4FO95754 770 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 EPPINO95925 133 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 PROS1P07225 676 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 ADRA2AP08913 450 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 NDUFV2P19404 249 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 MTNR1AP48039 350 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 TPMTP51580 245 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 WNT4P56705 351 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 RPP30P78346 268 aaKnown RBP8.99□□□□□ -0.97
COL6A3-204ENST00000392003 C3orf38Q5JPI3 329 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 MFSD12Q6NUT3 480 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 TMPRSS11AQ6ZMR5 421 aa8.99□□□□□ -0.97
COL6A3-204ENST00000392003 PRICKLE2Q7Z3G6 844 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms