RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DHRS1Q96LJ7 313 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 ALPK1Q96QP1 1244 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 HOXD1Q9GZZ0 328 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 APMAPQ9HDC9 416 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC22A11Q9NSA0 550 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 ACAD8Q9UKU7 415 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 CBLCQ9ULV8 474 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 B3GNT3Q9Y2A9 372 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 GPR55Q9Y2T6 319 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 GXYLT2A0PJZ3 443 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 PRAMEF25A6NGN4 478 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 VSTM2BA6NLU5 285 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 PCDH17O14917 1159 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 CBFA2T3O75081 653 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 ALOX12BO75342 701 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF12P17014 697 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 EPHA2P29317 976 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 EMP2P54851 167 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 CDC42P60953 191 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 DCST1Q5T197 706 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 CCNJQ5T5M9 372 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC38A9Q8NBW4 561 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 TOR1AIP2Q8NFQ8 470 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 C9orf43Q8TAL5 461 aaPredicted RBP16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 CTRCQ99895 268 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 ITPAQ9BY32 194 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 QRSL1Q9H0R6 528 aaKnown RBP16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 ANKRD19PQ9H560 264 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 OCEL1Q9H607 264 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 NMNAT1Q9HAN9 279 aaPredicted RBP16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 MGAT4BQ9UQ53 548 aa16.84■□□□□ 0.29
CCDC88C-203ENST00000389856 ASCC3Q8N3C0 2202 aaKnown RBP16.83■□□□□ 0.29
CCDC88C-203ENST00000389856 FRG2CA6NGY1 282 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 CLCA1A8K7I4 914 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 A8MUA0 341 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 IDSB3KWA1 339 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 M0R3H8 397 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 HRKO00198 91 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 AGRPO00253 132 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 DDAH2O95865 285 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 IGKV3-11P04433 115 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 DRD5P21918 477 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 TAS2R41P59536 307 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 EIF3IQ13347 325 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 GANABQ14697 944 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF836Q6ZNA1 936 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 OLIG3Q7RTU3 272 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 CMIPQ8IY22 773 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 OR1N1Q8NGS0 311 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 FAM81AQ8TBF8 368 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 SLC35B4Q969S0 331 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 VMP1Q96GC9 406 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 LCORQ96JN0 433 aaPredicted RBP16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 COPS4Q9BT78 406 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 ULBP3Q9BZM4 244 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 TBCCD1Q9NVR7 557 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 IMPAD1Q9NX62 359 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 LOXL2Q9Y4K0 774 aa16.83■□□□□ 0.28
CCDC88C-203ENST00000389856 C2orf92A0A1B0GVN3 265 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 A0A1W2PRQ8 180 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 C4orf47A7E2U8 309 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 ZIC2O95409 532 aaPredicted RBP16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 CT45A8P0DMV1 189 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 CT45A9P0DMV2 189 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 IFNGR2P38484 337 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 MASP1P48740 699 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 EEF1A1P68104 462 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 DGCR6Q14129 220 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 DGUOKQ16854 277 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 CT45A2Q5DJT8 189 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF527Q8NB42 609 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 OR6T1Q8NGN1 323 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 OR52J3Q8NH60 311 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF721Q8TF20 911 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 S100ZQ8WXG8 99 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 LIN37Q96GY3 246 aaPredicted RBP16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 CRELD1Q96HD1 420 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 DEPDC7Q96QD5 511 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 CRB3Q9BUF7 120 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 RASSF1Q9NS23 344 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 CNOT2Q9NZN8 540 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 FER1L5A0AVI2 2057 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 SEC16AO15027 2179 aa16.82■□□□□ 0.28
CCDC88C-203ENST00000389856 EFCAB10A6NFE3 127 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 J3KTA2 159 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 FMO6PO60774 539 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 CLPSP04118 112 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 CDK1P06493 297 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 GABRB1P18505 474 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 PSMB9P28065 219 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 RFX3P48380 749 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ST3GAL3Q11203 375 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 SPCS2Q15005 226 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 CCDC157Q569K6 752 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF770Q6IQ21 691 aaPredicted RBP16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 NPSR1Q6W5P4 371 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ANKRD37Q7Z713 158 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 LAPTM4BQ86VI4 370 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms