RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 PTTG2Q9NZH5 202 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 COLQQ9Y215 455 aaPredicted RBP10.09□□□□□ -0.79
NEDD9-201ENST00000379433 PADI2Q9Y2J8 665 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF175Q9Y473 711 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 SMAD9O15198 467 aaKnown RBP10.09□□□□□ -0.79
NEDD9-201ENST00000379433 GATCO43716 136 aaKnown RBP10.09□□□□□ -0.79
NEDD9-201ENST00000379433 IFNA16P05015 189 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 PCSK2P16519 638 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 HTR3AP46098 478 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 ENTPD1P49961 510 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 RBBP4Q09028 425 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 MED22Q15528 200 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 RFX4Q33E94 735 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 XAF1Q6GPH4 301 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 B3GLCTQ6Y288 498 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 SHISA6Q6ZSJ9 500 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF227Q86WZ6 799 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 GHDCQ8N2G8 530 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 SRFBP1Q8NEF9 429 aaKnown RBP10.09□□□□□ -0.79
NEDD9-201ENST00000379433 GAB3Q8WWW8 586 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 WDR12Q9GZL7 423 aaKnown RBP10.09□□□□□ -0.79
NEDD9-201ENST00000379433 C3orf14Q9HBI5 128 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 KCMF1Q9P0J7 381 aa10.09□□□□□ -0.79
NEDD9-201ENST00000379433 PMS2P1A4D2B8 440 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 GPR171O14626 319 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 TSPAN4O14817 238 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 WNT1P04628 370 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 H1F0P07305 194 aaKnown RBP10.08□□□□□ -0.8
NEDD9-201ENST00000379433 CKMT1AP12532 417 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 DRD2P14416 443 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 AHRP35869 848 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 RPS3AP61247 264 aaKnown RBP10.08□□□□□ -0.8
NEDD9-201ENST00000379433 MAD2L1BPQ15013 274 aaPredicted RBP10.08□□□□□ -0.8
NEDD9-201ENST00000379433 MAPK11Q15759 364 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 PYHIN1Q6K0P9 492 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 SHFQ7M4L6 423 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 TRIM69Q86WT6 500 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 LRRC25Q8N386 305 aaPredicted RBP10.08□□□□□ -0.8
NEDD9-201ENST00000379433 ZNF454Q8N9F8 522 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 NEURL2Q9BR09 285 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 POLR2J3Q9H1A7 115 aaKnown RBP10.08□□□□□ -0.8
NEDD9-201ENST00000379433 USE1Q9NZ43 259 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 PCDHGB1Q9Y5G3 927 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 BDP1A6H8Y1 2624 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 FAM186AA6NE01 2351 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 A0A1B0GTQ1 180 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 LINC00587B1AMM8 73 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 GPR37O15354 613 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 RGS10O43665 173 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 FHP07954 510 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 CPMP14384 443 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 FUT1P19526 365 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 AKR1D1P51857 326 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 RGS8P57771 180 aaPredicted RBP10.08□□□□□ -0.8
NEDD9-201ENST00000379433 CHAF1BQ13112 559 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 SMARCD3Q6STE5 483 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 LHFPL2Q6ZUX7 228 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 CROCCP3Q8IVE0 287 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 TPRKBQ9Y3C4 175 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 SDK2Q58EX2 2172 aa10.08□□□□□ -0.8
NEDD9-201ENST00000379433 A0A1W2PPC4 97 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 HSBP1L1C9JCN9 74 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 HRKO00198 91 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 SRFP11831 508 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 CHMP24386 653 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 GPR4P46093 362 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 XCR1P46094 333 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 KHKP50053 298 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 PCBP3P57721 371 aaKnown RBP10.07□□□□□ -0.8
NEDD9-201ENST00000379433 NCS1P62166 190 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 FUT5Q11128 374 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 CRB2Q5IJ48 1285 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 COLEC12Q5KU26 742 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 SLC43A2Q8N370 569 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 TCEANCQ8N8B7 351 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 OR52E4Q8NGH9 312 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 MMABQ96EY8 250 aaPredicted RBP10.07□□□□□ -0.8
NEDD9-201ENST00000379433 ZNF347Q96SE7 839 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 RNF167Q9H6Y7 350 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 CHMP1AQ9HD42 196 aaPredicted RBP10.07□□□□□ -0.8
NEDD9-201ENST00000379433 TNFRSF10DQ9UBN6 386 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 DAPP1Q9UN19 280 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 SLC9A8Q9Y2E8 581 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 SMIM30A4D0T7 59 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 PEX12O00623 359 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 WBP4O75554 376 aaKnown RBP10.07□□□□□ -0.8
NEDD9-201ENST00000379433 RHCEP18577 417 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 STARP49675 285 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 BTG2P78543 158 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 STX4Q12846 297 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 KIR2DS3Q14952 304 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 DUSP5Q16690 384 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 RBM48Q5RL73 367 aaKnown RBP10.07□□□□□ -0.8
NEDD9-201ENST00000379433 PODNL1Q6PEZ8 512 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 ABHD13Q7L211 337 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 GATSQ8NAP1 163 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 CAMKVQ8NCB2 501 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 GRHL3Q8TE85 626 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 GAL3ST3Q96A11 431 aa10.07□□□□□ -0.8
NEDD9-201ENST00000379433 SLC35A4Q96G79 324 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms