RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 SFXN2Q96NB2 322 aa10.11□□□□□ -0.79
RTN3-204ENST00000354497 MS4A8Q9BY19 250 aa10.11□□□□□ -0.79
RTN3-204ENST00000354497 OR2B2Q9GZK3 357 aa10.11□□□□□ -0.79
RTN3-204ENST00000354497 GALNT9Q9HCQ5 603 aa10.11□□□□□ -0.79
RTN3-204ENST00000354497 ELOVL5Q9NYP7 299 aa10.11□□□□□ -0.79
RTN3-204ENST00000354497 TAS2R10Q9NYW0 307 aa10.11□□□□□ -0.79
RTN3-204ENST00000354497 FETUBQ9UGM5 382 aa10.11□□□□□ -0.79
RTN3-204ENST00000354497 SLC22A20A6NK97 555 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 SMIM23A6NLE4 172 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 WASHC1A8K0Z3 465 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 HS3ST1O14792 307 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 NDUFA2O43678 99 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 CDH16O75309 829 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 BANF1O75531 89 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 FAM58BPP0C7Q3 252 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 FAM157CP0CG43 387 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 ZNF37AP17032 561 aaPredicted RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 PRKCAP17252 672 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 CNTFP26441 200 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 PGM1P36871 562 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 ACVR1BP36896 505 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 CDKN1AP38936 164 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 BUD31P41223 144 aaPredicted RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 HSPA7P48741 367 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 SRSF2Q01130 221 aaKnown RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 IRF8Q02556 426 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 LAPTM5Q13571 262 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 DDX39BQ13838 428 aaKnown RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 TIGD2Q4W5G0 525 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 TMEM35AQ53FP2 167 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 SPANXN3Q5MJ09 141 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 OR4C11Q6IEV9 310 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 METTL2BQ6P1Q9 378 aaKnown RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 TTC27Q6P3X3 843 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 ZDHHC24Q6UX98 284 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 C22orf34Q6ZV56 151 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 GPR180Q86V85 440 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 TDRPQ86YL5 185 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 IGFBPL1Q8WX77 278 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 AKAP1Q92667 903 aaKnown RBP eCLIP10.1□□□□□ -0.793e-8■■■■□ 20.2
RTN3-204ENST00000354497 TP53INP1Q96A56 240 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 ESAMQ96AP7 390 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 PLPPR2Q96GM1 343 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 ZNF486Q96H40 463 aaPredicted RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 PDLIM5Q96HC4 596 aaKnown RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 METTL2AQ96IZ6 378 aaKnown RBP10.1□□□□□ -0.79
RTN3-204ENST00000354497 TXNDC15Q96J42 360 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 UCN2Q96RP3 112 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 TMEM79Q9BSE2 394 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 EFCAB11Q9BUY7 163 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 HOXD1Q9GZZ0 328 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 OR51B5Q9H339 312 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 SCPEP1Q9HB40 452 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 C12orf4Q9NQ89 552 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 MS4A12Q9NXJ0 267 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 EHD3Q9NZN3 535 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 ASIC3Q9UHC3 531 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 PHF11Q9UIL8 331 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 DKKL1Q9UK85 242 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 NUP50Q9UKX7 468 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 PROCRQ9UNN8 238 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 DSCAMO60469 2012 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 NINQ8N4C6 2090 aa10.1□□□□□ -0.79
RTN3-204ENST00000354497 CCNT2O60583 730 aaKnown RBP10.09□□□□□ -0.79
RTN3-204ENST00000354497 PRAMEF4O60810 478 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ICOSLGO75144 302 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 CBR3O75828 277 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 GPR75O95800 540 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 CRHP06850 196 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 FREM3P0C091 2139 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 CD22P20273 847 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 TBXA2RP21731 343 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ABCD3P28288 659 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 MAGEA3P43357 314 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 LHX2P50458 406 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 AP2S1P53680 142 aaPredicted RBP10.09□□□□□ -0.79
RTN3-204ENST00000354497 ALDH18A1P54886 795 aaKnown RBP10.09□□□□□ -0.79
RTN3-204ENST00000354497 CHIT1Q13231 466 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 DUSP7Q16829 419 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ZBED5Q49AG3 693 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 C4orf46Q504U0 113 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 TCHHL1Q5QJ38 904 aaPredicted RBP10.09□□□□□ -0.79
RTN3-204ENST00000354497 ATAD3BQ5T9A4 648 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 PRAMEF9Q5VWM5 478 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 SLC30A6Q6NXT4 461 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 GALNT7Q86SF2 657 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 CCDC28AQ8IWP9 274 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 CNTN4Q8IWV2 1026 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 GALNT12Q8IXK2 581 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 SLC38A6Q8IZM9 456 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 LILRB2Q8N423 598 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 RNF175Q8N4F7 328 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ARL6IP6Q8N6S5 226 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ZNF611Q8N823 705 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ZNF610Q8N9Z0 462 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ADCY4Q8NFM4 1077 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 TBC1D15Q8TC07 691 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 ACTRT2Q8TDY3 377 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 CERS2Q96G23 380 aa10.09□□□□□ -0.79
RTN3-204ENST00000354497 NODALQ96S42 347 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms