RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SERPINA4P29622 427 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 S100A11P31949 105 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PTGER1P34995 402 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ARHGDIBP52566 201 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 GPR85P60893 370 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 SLC3A1Q07837 685 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 FUT5Q11128 374 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PGGHGQ32M88 737 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PABPC1L2AQ5JQF8 200 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 FAM26DQ5JW98 314 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PIP5KL1Q5T9C9 394 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 B3GNTL1Q67FW5 361 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 SLC25A25Q6KCM7 469 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 RPTNQ6XPR3 784 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 FAM83HQ6ZRV2 1179 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 TMUB2Q71RG4 321 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 TPRA1Q86W33 373 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 LURAP1LQ8IV03 231 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 LINC00469Q8N7U9 141 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 OR5W2Q8NH69 310 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ABHD4Q8TB40 342 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ZDHHC1Q8WTX9 485 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 XAGE5Q8WWM1 108 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 SORCS1Q8WY21 1168 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 DCBLD2Q96PD2 775 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 OR2A7Q96R45 310 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 OR1F2PQ96R84 312 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PARK7Q99497 189 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 ESRP2Q9H6T0 727 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 SEMA4GQ9NTN9 838 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 B4GALT6Q9UBX8 382 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ZMIZ1Q9ULJ6 1067 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 GPR55Q9Y2T6 319 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 NUP210Q8TEM1 1887 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 CCL15-CCL14A0A0B4J2E2 113 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 A0A1W2PPK0 400 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 MPTX1A8MV57 137 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 CHURC1-FNTBB4DL54 471 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 D6RAR5 112 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PLPP1O14494 284 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 MID1O15344 667 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PRAF2O60831 178 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 IGSF6O95976 241 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 HPP00738 406 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 IGF2P01344 180 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 NR2F1P10589 423 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 HMGA1P17096 107 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 ANXA7P20073 488 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 PSMB1P20618 241 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 C4BPBP20851 252 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 MST1P26927 711 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 AHRP35869 848 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 BUD31P41223 144 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 GPR4P46093 362 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 HOXA1P49639 335 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 PNLIPRP1P54315 467 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PCBP4P57723 403 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 SEC61A1P61619 476 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 CAMK1Q14012 370 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 COL9A2Q14055 689 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 CCL15Q16663 113 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 C2orf68Q2NKX9 166 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 MORN1Q5T089 497 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PDSS1Q5T2R2 415 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 METTL11BQ5VVY1 283 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ZNF660Q6AZW8 331 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 FAAP20Q6NZ36 180 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PRSS55Q6UWB4 352 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 GLDNQ6ZMI3 551 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 TRMT11Q7Z4G4 463 aaKnown RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 DNAJB7Q7Z6W7 309 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 KRT78Q8N1N4 520 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ACBD7Q8N6N7 88 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 KCT2Q8NC54 265 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 SMAP2Q8WU79 429 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 LINC01599Q8WXQ3 324 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 LRRC46Q96FV0 321 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 PGLYRP3Q96LB9 341 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 HCAR1Q9BXC0 346 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 ANKRD19PQ9H560 264 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 POLMQ9NP87 494 aaPredicted RBP6.33□□□□□ -1.4
VPS39-202ENST00000348544 COA4Q9NYJ1 87 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 IL20Q9NYY1 176 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 CAMK2AQ9UQM7 478 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 NTNG1Q9Y2I2 539 aa6.33□□□□□ -1.4
VPS39-202ENST00000348544 SLC5A10A0PJK1 596 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CPSF4LA6NMK7 179 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZNF197O14709 1029 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PLPP2O43688 288 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SIGLEC6O43699 453 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PIP5K1CO60331 668 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 GREM1O60565 184 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SDC3O75056 442 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 RP2O75695 350 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 HIST1H2ABP04908 130 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 RAB3BP20337 219 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 XPAP23025 273 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 TRHRP34981 398 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 ACVR1BP36896 505 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CTSOP43234 321 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms