RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ADH7P40394 386 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 MEOX1P50221 254 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 CRYBA2P53672 197 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 KCNJ10P78508 379 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 C17orf67Q0P5P2 114 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 FOXO1Q12778 655 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 FGFBP1Q14512 234 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 ZNF311Q5JNZ3 666 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 FNDC7Q5VTL7 733 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 WDSUB1Q8N9V3 476 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 WDR60Q8WVS4 1066 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 TMEM41AQ96HV5 264 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 JSRP1Q96MG2 331 aaPredicted RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 UBL7Q96S82 380 aaPredicted RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 SPATA5L1Q9BVQ7 753 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 PCDHAC1Q9H158 963 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 SDHAF3Q9NRP4 125 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 TUBA8Q9NY65 449 aaPredicted RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 ZNF232Q9UNY5 417 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 TLN1Q9Y490 2541 aaKnown RBP20.24■□□□□ 0.83
SDC3-202ENST00000339394 OPN1SWP03999 348 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 THBS1P07996 1170 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 NCK1P16333 377 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 ME2P23368 584 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 PGM1P36871 562 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 MASP1P48740 699 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 DMTNQ08495 405 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 LARS2Q15031 903 aaKnown RBP20.24■□□□□ 0.83
SDC3-202ENST00000339394 ASRGL1Q7L266 308 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 EIF3MQ7L2H7 374 aaKnown RBP20.24■□□□□ 0.83
SDC3-202ENST00000339394 PTRH1Q86Y79 214 aaKnown RBP20.24■□□□□ 0.83
SDC3-202ENST00000339394 ARMC8Q8IUR7 673 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 MISPQ8IVT2 679 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 Q8NA96 180 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 SLC39A7Q92504 469 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 TAMM41Q96BW9 452 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 CACYBPQ9HB71 228 aaKnown RBP20.24■□□□□ 0.83
SDC3-202ENST00000339394 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.24■□□□□ 0.83
SDC3-202ENST00000339394 RLIMQ9NVW2 624 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 SEC14L3Q9UDX4 400 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 ZNF443Q9Y2A4 671 aaPredicted RBP20.24■□□□□ 0.83
SDC3-202ENST00000339394 HRH3Q9Y5N1 445 aa20.24■□□□□ 0.83
SDC3-202ENST00000339394 B4DXG7 233 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 GNB5O14775 395 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 BCAS1O75363 584 aaPredicted RBP20.23■□□□□ 0.83
SDC3-202ENST00000339394 RFC3P40938 356 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 KLRB1Q12918 225 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 ZSCAN26Q16670 478 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 LIN52Q52LA3 116 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 TIGD3Q6B0B8 471 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 GLYATQ6IB77 296 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 RPUSD3Q6P087 351 aaKnown RBP20.23■□□□□ 0.83
SDC3-202ENST00000339394 PGM2L1Q6PCE3 622 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 YTHDF3Q7Z739 585 aaKnown RBP20.23■□□□□ 0.83
SDC3-202ENST00000339394 SMYD1Q8NB12 490 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 ZFP62Q8NB50 900 aaPredicted RBP20.23■□□□□ 0.83
SDC3-202ENST00000339394 MCUR1Q96AQ8 359 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 GNRHR2Q96P88 292 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 ZFP64Q9NPA5 681 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 PPP4R1LQ9P1A2 415 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 CHST2Q9Y4C5 530 aa20.23■□□□□ 0.83
SDC3-202ENST00000339394 LRRC3CA6NJW4 275 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 GTPBP1O00178 669 aaKnown RBP20.22■□□□□ 0.83
SDC3-202ENST00000339394 SNPHO15079 494 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 RASAL1O95294 804 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 CSTAP01040 98 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 ENDOUP21128 410 aaKnown RBP20.22■□□□□ 0.83
SDC3-202ENST00000339394 EEF1A1P68104 462 aaKnown RBP20.22■□□□□ 0.83
SDC3-202ENST00000339394 PMP22Q01453 160 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 PLAURQ03405 335 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 LRRC23Q53EV4 343 aaPredicted RBP20.22■□□□□ 0.83
SDC3-202ENST00000339394 COLEC12Q5KU26 742 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 CBLN3Q6UW01 205 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 ZNF836Q6ZNA1 936 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 PLCZ1Q86YW0 608 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 CMIPQ8IY22 773 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 CLIP4Q8N3C7 705 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 FAM98AQ8NCA5 519 aaKnown RBP20.22■□□□□ 0.83
SDC3-202ENST00000339394 OR1J4Q8NGS1 313 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 ZNF597Q96LX8 424 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 BOKQ9UMX3 212 aaPredicted RBP20.22■□□□□ 0.83
SDC3-202ENST00000339394 SLC35A3Q9Y2D2 325 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 CARD8Q9Y2G2 431 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 ATRXP46100 2492 aa20.22■□□□□ 0.83
SDC3-202ENST00000339394 EXPH5Q8NEV8 1989 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 ATXN7O15265 892 aaPredicted RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 HCRTR2O43614 444 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 TPST1O60507 370 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 UBTFL6P0CB48 400 aaPredicted RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 UBL4AP11441 157 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 ELAVL4P26378 380 aaKnown RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 PRKAR1BP31321 381 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 ZNF117Q03924 483 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 BNIP2Q12982 314 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 TRIM25Q14258 630 aaKnown RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 DUSP7Q16829 419 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 NDUFAF6Q330K2 333 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 MRPL2Q5T653 305 aaKnown RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 RNF220Q5VTB9 566 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 ULK2Q8IYT8 1036 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms