RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZBTB20Q9HC78 741 aaPredicted RBP15.21■□□□□ 0.02
USP4-201ENST00000265560 C20orf141Q9NUB4 165 aa15.21■□□□□ 0.02
USP4-201ENST00000265560 ABCB7O75027 752 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 THBS1P07996 1170 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 GGT2P36268 569 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 TRAM2Q15035 370 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 CD226Q15762 336 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 CBLN3Q6UW01 205 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 APLFQ8IW19 511 aaPredicted RBP15.2■□□□□ 0.02
USP4-201ENST00000265560 ZNF540Q8NDQ6 660 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 HDAC2Q92769 488 aaKnown RBP15.2■□□□□ 0.02
USP4-201ENST00000265560 HOXB13Q92826 284 aaPredicted RBP15.2■□□□□ 0.02
USP4-201ENST00000265560 DGCR6LQ9BY27 220 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 PRODH2Q9UF12 536 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 FAM20BO75063 409 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 MAP2K4P45985 399 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 SMIM11AP58511 58 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 CCDC81Q6ZN84 652 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 KIF18BQ86Y91 864 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 SETD9Q8NE22 299 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 MR1Q95460 341 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 B3GALT1Q9Y5Z6 326 aa15.2■□□□□ 0.02
USP4-201ENST00000265560 C2orf72A6NCS6 295 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ADAP00813 363 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 TP53P04637 393 aaPredicted RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 HPGDP15428 266 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ETV5P41161 510 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 HLCSP50747 726 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 PLA2G2CQ5R387 149 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 HLA-DQA1Q5Y7H0 255 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 RANBP3LQ86VV4 465 aaPredicted RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 BMPERQ8N8U9 685 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 DAZLQ92904 295 aaKnown RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 CRB3Q9BUF7 120 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 MGAT4BQ9UQ53 548 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 CDC42EP2O14613 210 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ZNF354AO60765 605 aaPredicted RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 CSTAP01040 98 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 OSMP13725 252 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 CD59P13987 128 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 EMP2P54851 167 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ZFP36L1Q07352 338 aaKnown RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 EBPQ15125 230 aaKnown RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 DECR1Q16698 335 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 EIPR1Q53HC9 387 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ACSM5Q6NUN0 579 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 PHOSPHO1Q8TCT1 267 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ADIPOR1Q96A54 375 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ZNF524Q96C55 264 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 DNAJB12Q9NXW2 375 aaKnown RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 TVP23BQ9NYZ1 205 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 COPS7AQ9UBW8 275 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 C4orf47A7E2U8 309 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ALOX12BO75342 701 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 AK1P00568 194 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 NR4A1P22736 598 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ATP12AP54707 1039 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 ZNF385CQ66K41 422 aaPredicted RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 OR5M10Q6IEU7 315 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 PTCHD4Q6ZW05 846 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 OVCH1Q7RTY7 1134 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 MARCH9Q86YJ5 346 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 TMCO5AQ8N6Q1 288 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 LCORQ96JN0 433 aaPredicted RBP15.19■□□□□ 0.02
USP4-201ENST00000265560 PITX2Q99697 317 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 PRSS27Q9BQR3 290 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 DPH1Q9BZG8 443 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 FAM86C1Q9NVL1 165 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 CARD8Q9Y2G2 431 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 GPR52Q9Y2T5 361 aa15.19■□□□□ 0.02
USP4-201ENST00000265560 LRRN3E7EW58 273 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 ICOSLGO75144 302 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 C21orf33P30042 268 aaPredicted RBP15.18■□□□□ 0.02
USP4-201ENST00000265560 SLC5A2P31639 672 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 ANKRD37Q7Z713 158 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 GALNT6Q8NCL4 622 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 OR1N1Q8NGS0 311 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 SLC46A1Q96NT5 459 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 SPSB2Q99619 263 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 SLC39A1Q9NY26 324 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 GPR83Q9NYM4 423 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 DNAJC27Q9NZQ0 273 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 NUP210LQ5VU65 1888 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 FAM186AA6NE01 2351 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 WWP2O00308 870 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 RFPL3O75679 317 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 ACAA2P42765 397 aaKnown RBP15.18■□□□□ 0.02
USP4-201ENST00000265560 PPICP45877 212 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 GINS1Q14691 196 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 SPARTQ8N0X7 666 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 METTL21AQ8WXB1 218 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 PELOQ9BRX2 385 aaKnown RBP15.18■□□□□ 0.02
USP4-201ENST00000265560 G6PC3Q9BUM1 346 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 WWTR1Q9GZV5 400 aa15.18■□□□□ 0.02
USP4-201ENST00000265560 NAA50Q9GZZ1 169 aaKnown RBP15.18■□□□□ 0.02
USP4-201ENST00000265560 ZNF223Q9UK11 482 aaPredicted RBP15.18■□□□□ 0.02
USP4-201ENST00000265560 A0A1B0GWA3 101 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 DRD5P21918 477 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 IFNA8P32881 189 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 IL18R1Q13478 541 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms