RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 AIREO43918 545 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 KCNK2O95069 426 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 GGT2P36268 569 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 EMP3P54852 163 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 CBFBQ13951 182 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 PROX2Q3B8N5 592 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 ARHGAP11AQ6P4F7 1023 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 MAMDC2Q7Z304 686 aaPredicted RBP10.75□□□□□ -0.69
VPS4A-201ENST00000254950 KLHL36Q8N4N3 616 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 UCN3Q969E3 161 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 BPIFA2Q96DR5 249 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 KCND3Q9UK17 655 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 C4orf47A7E2U8 309 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 RFPL3O75679 317 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 NDUFB2O95178 105 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 GNAO1P09471 354 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 NR2C1P13056 603 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 PNLIPP16233 465 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 PCYT1AP49585 367 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 E2F2Q14209 437 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 TMEM236Q5W0B7 351 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 CCDC80Q76M96 950 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 OMA1Q96E52 524 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 TMEM80Q96HE8 168 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 SAMD8Q96LT4 415 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 CHCHD6Q9BRQ6 235 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 SIRT3Q9NTG7 399 aaPredicted RBP10.75□□□□□ -0.69
VPS4A-201ENST00000254950 PILRAQ9UKJ1 303 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 CACNA1EQ15878 2313 aa10.75□□□□□ -0.69
VPS4A-201ENST00000254950 C11orf98E9PRG8 122 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 MED26O95402 600 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 TALDO1P37837 337 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 DAPP51397 102 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 DUSP8Q13202 625 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 MFSD13AQ14CX5 517 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 PTGES3Q15185 160 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 EXT1Q16394 746 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 RAET1LQ5VY80 246 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 XKR5Q6UX68 686 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 IQCF1Q8N6M8 205 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CNOT9Q92600 299 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 TBX5Q99593 518 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 PRRX2Q99811 253 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 ZPBPQ9BS86 351 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 RAB33BQ9H082 229 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CHST8Q9H2A9 424 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 GPATCH2Q9NW75 528 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CTSFQ9UBX1 484 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CDH10Q9Y6N8 788 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 SH3D21A4FU49 640 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 AGAP5A6NIR3 686 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 MYL9P24844 172 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 DEFA1P59665 94 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 DEFA3P59666 94 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CDK5R2Q13319 367 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 RHBDD2Q6NTF9 364 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF836Q6ZNA1 936 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 QSOX2Q6ZRP7 698 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CXXC5Q7LFL8 322 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 MISPQ8IVT2 679 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 RNF113BQ8IZP6 322 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CLEC1AQ8NC01 280 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 GALNT6Q8NCL4 622 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 TM4SF19Q96DZ7 209 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 SLC38A1Q9H2H9 487 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 ANKRD19PQ9H560 264 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF768Q9H5H4 540 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 GPN2Q9H9Y4 310 aaPredicted RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 TMEM74BQ9NUR3 256 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 D6RAR5 112 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 OR2T1O43869 369 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 SP9P0CG40 484 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CD36P16671 472 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 FUT1P19526 365 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 NR4A1P22736 598 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 ELAVL4P26378 380 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 GABARAPL2P60520 117 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 TSPAN31Q12999 210 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 TCEAL6Q6IPX3 200 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 IL20RBQ6UXL0 311 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CPEB2Q7Z5Q1 589 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 RBM45Q8IUH3 476 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 CHERPQ8IWX8 916 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 ESX1Q8N693 406 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 UFD1Q92890 307 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 TCEAL3Q969E4 200 aa10.74□□□□□ -0.69
VPS4A-201ENST00000254950 PPIEQ9UNP9 301 aaKnown RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 EP300Q09472 2414 aaPredicted RBP10.74□□□□□ -0.69
VPS4A-201ENST00000254950 SCN3AQ9NY46 2000 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 CCDC187A0A096LP49 1063 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 A0A1B0GWA3 101 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 PLD2O14939 933 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ACOX3O15254 700 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 PFDN1O60925 122 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 CSO75390 466 aaKnown RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 NADKO95544 446 aaPredicted RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 POLR2IP36954 125 aaKnown RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF658BQ4V348 819 aaPredicted RBP10.73□□□□□ -0.69
VPS4A-201ENST00000254950 SPANXN2Q5MJ10 180 aa10.73□□□□□ -0.69
VPS4A-201ENST00000254950 TMEM225Q6GV28 225 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms