RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SLC6A17Q9H1V8 727 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 CLEC4MQ9H2X3 399 aaPredicted RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 MOV10Q9HCE1 1003 aaKnown RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 COMMD9Q9P000 198 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 FRG2CA6NGY1 282 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 CD36P16671 472 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 B4GALNT1Q00973 533 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 RAB11FIP2Q7L804 512 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 ST8SIA1Q92185 356 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 RAB33BQ9H082 229 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 DSN1Q9H410 356 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 GLIPR2Q9H4G4 154 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 PRAMEF25A6NGN4 478 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 VAMP5O95183 116 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 UBE2NP61088 152 aaKnown RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 COL13A1Q5TAT6 717 aaPredicted RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 NEK7Q8TDX7 302 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 TP53INP1Q96A56 240 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 MSLNLQ96KJ4 702 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 SGCZQ96LD1 299 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 NMNAT1Q9HAN9 279 aaPredicted RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 VLDLRP98155 873 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 SLC22A10Q63ZE4 541 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 CRIPAKQ8N1N5 446 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 OR5M3Q8NGP4 307 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 OR2A1Q8NGT9 310 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 SEC61A2Q9H9S3 476 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 CNIH4Q9P003 139 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 SLC7A7Q9UM01 511 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 GPR39O43194 453 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 GGT2P36268 569 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 ROR2Q01974 943 aaKnown RBP12.74□□□□□ -0.37
LDLR-201ENST00000252444 ANGPT1Q15389 498 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 TMPPEQ6ZT21 453 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 RASSF6Q6ZTQ3 369 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 CCDC107Q8WV48 283 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 PHF12Q96QT6 1004 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 CENPOQ9BU64 300 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 LAT2Q9GZY6 243 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 NIPAL2Q9H841 368 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 IFT46Q9NQC8 304 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 A0A1W2PPL8 197 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 HSPB2A8KAH6 182 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 CLDN25C9JDP6 229 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 CD160O95971 181 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 BSGP35613 385 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 PNLIPRP2P54317 469 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 HSPB2Q16082 182 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 SLC35D3Q5M8T2 416 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 RTL6Q6ICC9 239 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 MBOAT2Q6ZWT7 520 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 NSMAFQ92636 917 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 PRR11Q96HE9 360 aaPredicted RBP12.74□□□□□ -0.37
LDLR-201ENST00000252444 ZNF419Q96HQ0 510 aaPredicted RBP12.74□□□□□ -0.37
LDLR-201ENST00000252444 PAK1IP1Q9NWT1 392 aaPredicted RBP12.74□□□□□ -0.37
LDLR-201ENST00000252444 UBFD1O14562 309 aaKnown RBP12.74□□□□□ -0.37
LDLR-201ENST00000252444 GNB5O14775 395 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 KCNJ5P48544 419 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 CNPY1Q3B7I2 92 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 ZER1Q7Z7L7 766 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 SLC22A16Q86VW1 577 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 CCDC74BQ96LY2 380 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 ALKBH4Q9NXW9 302 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 YARS2Q9Y2Z4 477 aaKnown RBP12.74□□□□□ -0.37
LDLR-201ENST00000252444 A0A0U1RQS6 177 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 PRODHO43272 600 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 GMFGO60234 142 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 INMTO95050 263 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 OR1Q1Q15612 314 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 SLC2A12Q8TD20 617 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 NXPE2Q96DL1 559 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 COLQQ9Y215 455 aaPredicted RBP12.74□□□□□ -0.37
LDLR-201ENST00000252444 SESN1Q9Y6P5 492 aa12.74□□□□□ -0.37
LDLR-201ENST00000252444 A0A0A6YYD5 115 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 A0A1B0GTQ1 180 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 NARSO43776 548 aaKnown RBP12.73□□□□□ -0.37
LDLR-201ENST00000252444 SLC43A1O75387 559 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 UTS2O95399 124 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 IL9P15248 144 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 CD22P20273 847 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 LPAL2Q16609 132 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 IER5LQ5T953 404 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 ZNF740Q8NDX6 193 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 OMA1Q96E52 524 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 LDB3O75112 727 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 RGS9O75916 674 aaPredicted RBP12.73□□□□□ -0.37
LDLR-201ENST00000252444 IGHG1P01857 330 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 GLO1Q04760 184 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 EMC4Q5J8M3 183 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 NRMQ8IXM6 262 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 CD93Q9NPY3 652 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 MUTYHQ9UIF7 546 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 SULT2B1O00204 365 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 OR1E2P47887 323 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 SMCO1Q147U7 214 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 CPEB2Q7Z5Q1 589 aaKnown RBP12.73□□□□□ -0.37
LDLR-201ENST00000252444 UBE2Q1Q7Z7E8 422 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 OR5L1Q8NGL2 311 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 THEM6Q8WUY1 208 aa12.73□□□□□ -0.37
LDLR-201ENST00000252444 HAVCR1Q96D42 359 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms