RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CLDN22Q8N7P3 220 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 OR2L3Q8NG85 312 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 UFD1Q92890 307 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 NLGN3Q9NZ94 848 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 GPR34Q9UPC5 381 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 TMEM129A0AVI4 362 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 FAM172BPA6NC97 362 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SLC30A4O14863 429 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 PRNPP04156 253 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 ZNF888P0CJ79 500 aaPredicted RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 TEAD1P28347 426 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 ATP6V1E1P36543 226 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SMUG1Q53HV7 270 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 MRM1Q6IN84 353 aaKnown RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 PLET1Q6UQ28 207 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 ZNF836Q6ZNA1 936 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 LRRC17Q8N6Y2 441 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 CXorf40AQ8TE69 158 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SETD7Q8WTS6 366 aaKnown RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 TRIM63Q969Q1 353 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 C10orf90Q96M02 699 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 TMEM43Q9BTV4 400 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 FGF20Q9NP95 211 aaPredicted RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 MRPS7Q9Y2R9 242 aaKnown RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 SMG1Q96Q15 3661 aaKnown RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 A0A0G2JK05 382 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 FAM240BA0A1B0GVZ2 78 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 ABHD14A-ACY1A0A1B0GW23 586 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 FAM171A2A8MVW0 826 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 PRR32B1ATL7 298 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 TEX46H3BTG2 121 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 J3QRE1 110 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 FABP7O15540 132 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 EEF1E1O43324 174 aaKnown RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 PROM1O43490 865 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 TOXO94900 526 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 CEACAM5P06731 702 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 RAB40BQ12829 278 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 ZNF57Q68EA5 555 aaPredicted RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 SLC36A4Q6YBV0 504 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SAMD12Q8N8I0 201 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 AUNIPQ9H7T9 357 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 RPRD1BQ9NQG5 326 aaKnown RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 RBFOX1Q9NWB1 397 aaKnown RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 FLVCR2Q9UPI3 526 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 CDH10Q9Y6N8 788 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 GRPRP30550 384 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 GZMKP49863 264 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 RGS8P57771 180 aaPredicted RBP9.94□□□□□ -0.82
USP28-201ENST00000003302 TGM3Q08188 693 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 TSPAN31Q12999 210 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SLC9A5Q14940 896 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 MFSD12Q6NUT3 480 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SLC48A1Q6P1K1 146 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 KRT74Q7RTS7 529 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 MRGPREQ86SM8 312 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 KRT73Q86Y46 540 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 GRHL3Q8TE85 626 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 DEDD2Q8WXF8 326 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 OR8D1Q8WZ84 308 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 ADAP2Q9NPF8 381 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 NUDT15Q9NV35 164 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 IL20Q9NYY1 176 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 DEC1Q9P2X7 70 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SLC9A8Q9Y2E8 581 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 A0A1W2PRG6 482 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PRICKLE3O43900 615 aaPredicted RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 SRPRAP08240 638 aaKnown RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 SNRPBP14678 240 aaKnown RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 RPS27P42677 84 aaKnown RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 PLA2G7Q13093 441 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 SLC38A6Q8IZM9 456 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 ZNF687Q8N1G0 1237 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 OR10H4Q8NGA5 316 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 FGF13Q92913 245 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 SLC41A3Q96GZ6 507 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 ACSS1Q9NUB1 689 aaPredicted RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 GXYLT2A0PJZ3 443 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 DRD5P21918 477 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 CLDN12P56749 244 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PPP2CBP62714 309 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PPP2CAP67775 309 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 DGCR2P98153 550 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 RUNX2Q13950 521 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PGGHGQ32M88 737 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PSRC1Q6PGN9 363 aaPredicted RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 CD300LDQ6UXZ3 194 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 SETD6Q8TBK2 473 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 OR52D1Q9H346 318 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 MOV10Q9HCE1 1003 aaKnown RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 FAM25AB3EWG3 89 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 FAM25CB3EWG5 89 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 FAM25GB3EWG6 89 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 CASC3O15234 703 aaKnown RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 UQCRC1P31930 480 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 ZIC1Q15915 447 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PUS10Q3MIT2 529 aaKnown RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 DNAJA4Q8WW22 397 aaPredicted RBP9.93□□□□□ -0.82
USP28-201ENST00000003302 RIPOR3Q96MK2 946 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PDCD1LG2Q9BQ51 273 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms