RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DAPK2Q9UIK4 370 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 NUP50Q9UKX7 468 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RAB26Q9ULW5 256 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PYCARDQ9ULZ3 195 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ST14Q9Y5Y6 855 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SCN2AQ99250 2005 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ARFGEF1Q9Y6D6 1849 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF670-ZNF695F2Z2N8 137 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 G3V3Y1 287 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PPIHO43447 177 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 OR1I1O60431 355 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 MAFKO60675 156 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RAD51DO75771 328 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 HOXD4P09016 255 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF16P17020 682 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 EFNA1P20827 205 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RPP30P78346 268 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SLC35A1P78382 337 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ADGRE1Q14246 886 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 MBTPS1Q14703 1052 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TMEM176BQ3YBM2 270 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 KRTCAP3Q53RY4 240 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 IRF2BP2Q7Z5L9 587 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CPEB2Q7Z5Q1 589 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 HOXB13Q92826 284 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PPM1MQ96MI6 270 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CTPS2Q9NRF8 586 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TOR4AQ9NXH8 423 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ACTR3BQ9P1U1 418 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 THSD7AQ9UPZ6 1657 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ARFGEF3Q5TH69 2177 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SPTY2D1-AS1A0A0U1RR47 76 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SLC22A23A1A5C7 686 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SSX4O60224 188 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 NPHS1O60500 1241 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 DNAJB6O75190 326 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CREG1O75629 220 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 GLP1RP43220 463 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 KCNAB2Q13303 367 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 MED22Q15528 200 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CA9Q16790 459 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 XKRXQ6PP77 449 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 UGT2A3Q6UWM9 527 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZCCHC23Q6ZST2 131 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SCML4Q8N228 414 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TCEANCQ8N8B7 351 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ESAMQ96AP7 390 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PDXPQ96GD0 296 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 JMJD8Q96S16 334 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CDH22Q9UJ99 828 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ABCG2Q9UNQ0 655 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RAXQ9Y2V3 346 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 A6NIZ1 184 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PSMA1P25786 263 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 NAA10P41227 235 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 IRAK1P51617 712 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RAP1BP61224 184 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RAP1AP62834 184 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 GALNT1Q10472 559 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 FAM174BQ3ZCQ3 159 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 IDNKQ5T6J7 187 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PLET1Q6UQ28 207 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 GALNT5Q7Z7M9 940 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 FBXO17Q96EF6 278 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF471Q9BX82 626 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 DERL2Q9GZP9 239 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 KLHL13Q9P2N7 655 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ABCD2Q9UBJ2 740 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 OARD1Q9Y530 152 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TCRBV9S1A1TA0A576 114 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 SLC22A20A6NK97 555 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 BBIP1A8MTZ0 92 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 EFCAB9A8MZ26 197 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 TARM1B6A8C7 271 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 M0R1B8 84 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 METTL18O95568 372 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 PNMTP11086 282 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 S1PR1P21453 382 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 PTGER4P35408 488 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 RNF144AP50876 292 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-218ENST00000640036 FABP6P51161 128 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 SLC26A5P58743 744 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 GINS1Q14691 196 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 TATDN3Q17R31 274 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 RBM48Q5RL73 367 aaKnown RBP4.71□□□□□ -1.65
SCN1A-218ENST00000640036 SLC16A14Q7RTX9 510 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 CAMKMTQ7Z624 323 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 SLC43A2Q8N370 569 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF615Q8N8J6 731 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 STEAP2Q8NFT2 490 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 OR10H4Q8NGA5 316 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 OR5K2Q8NHB8 316 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 FAM173AQ9BQD7 235 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 CSNK1G1Q9HCP0 422 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 GMPPBQ9Y5P6 360 aa4.71□□□□□ -1.65
SCN1A-218ENST00000640036 D6RAR5 112 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 BCHEP06276 602 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SPINK2P20155 84 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 BCKDHBP21953 392 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 CTGFP29279 349 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms