RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 UNC119Q13432 240 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 LRIT3Q3SXY7 679 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 TMEM52BQ4KMG9 183 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 GLRA4Q5JXX5 417 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 BEND6Q5SZJ8 279 aaPredicted RBP2.14□□□□□ -2.07
CD44-239ENST00000639002 LIPKQ5VXJ0 399 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 BTNL3Q6UXE8 466 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 LYPD1Q8N2G4 141 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 BPIFB2Q8N4F0 458 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 NKAIN3Q8N8D7 197 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 C5orf30Q96GV9 206 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 CBWD1Q9BRT8 395 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 NDUFAF3Q9BU61 184 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 FUT8Q9BYC5 575 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 KAT8Q9H7Z6 458 aaKnown RBP2.14□□□□□ -2.07
CD44-239ENST00000639002 PHF11Q9UIL8 331 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 SAMD4AQ9UPU9 718 aaKnown RBP2.14□□□□□ -2.07
CD44-239ENST00000639002 USP16Q9Y5T5 823 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 RPGRIP1LQ68CZ1 1315 aa2.14□□□□□ -2.07
CD44-239ENST00000639002 IGLV4-69A0A075B6H9 119 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 MACROD2A1Z1Q3 448 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 A6NDX4 124 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 FBLL1A6NHQ2 334 aaKnown RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 TMX2-CTNND1H3BSU7 103 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 K7N7A8 449 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 ZNF264O43296 627 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 PPIHO43447 177 aaKnown RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 CXCL14O95715 111 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 PCCAP05165 728 aaPredicted RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 AREGP15514 252 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 MUTP22033 750 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 AQP1P29972 269 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 RPL4P36578 427 aaKnown RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 KIR2DS2P43631 304 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 CASP9P55211 416 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 VLDLRP98155 873 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 MADCAM1Q13477 382 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 UBE2V2Q15819 145 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 CDC37Q16543 378 aaPredicted RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 LY6EQ16553 131 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 CCDC92Q53HC0 331 aaPredicted RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 CYBRD1Q53TN4 286 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 IYDQ6PHW0 289 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 ZNF562Q6V9R5 426 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 RNF165Q6ZSG1 346 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 FAM43BQ6ZT52 329 aaPredicted RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 FAM220AQ7Z4H9 259 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 ZNF429Q86V71 674 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 FAM71E2Q8N5Q1 922 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 Q8N9W7 124 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 LPCAT1Q8NF37 534 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 ABCG4Q9H172 646 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 ZNF225Q9UK10 706 aa2.13□□□□□ -2.07
CD44-239ENST00000639002 UBQLN1Q9UMX0 589 aaKnown RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.13□□□□□ -2.07
CD44-239ENST00000639002 IGLV4-60A0A075B6I1 120 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 TMEM89A2RUT3 159 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 TMEM110-MUSTN1A8MSY1 372 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 A8MUA0 341 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 TLR4O00206 839 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 MRPS6P82932 125 aaKnown RBP2.12□□□□□ -2.07
CD44-239ENST00000639002 MORF4L2Q15014 288 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 TSPO2Q5TGU0 170 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 SLX4IPQ5VYV7 408 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 LRRC31Q6UY01 552 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 GET4Q7L5D6 327 aaPredicted RBP2.12□□□□□ -2.07
CD44-239ENST00000639002 TMEM110Q86TL2 294 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 LINC01551Q86U37 167 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 ZSCAN30Q86W11 494 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 SKA3Q8IX90 412 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 CCDC170Q8IYT3 715 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 TMEM252Q8N6L7 170 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 ADIPOR1Q96A54 375 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 RNF185Q96GF1 192 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 DESI2Q9BSY9 194 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 RNF126Q9BV68 326 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 CHIAQ9BZP6 476 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 ALDH8A1Q9H2A2 487 aaPredicted RBP2.12□□□□□ -2.07
CD44-239ENST00000639002 NARFLQ9H6Q4 476 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 ZDHHC11Q9H8X9 412 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 IL1RAPL2Q9NP60 686 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 NDUFA13Q9P0J0 144 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 GHRLQ9UBU3 117 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 ISY1Q9ULR0 285 aaKnown RBP2.12□□□□□ -2.07
CD44-239ENST00000639002 TP53TG5Q9Y2B4 290 aa2.12□□□□□ -2.07
CD44-239ENST00000639002 KIAA1024LP59773 190 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 HERVK_113P61574 105 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 RND3P61587 244 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 BTG3Q14201 252 aaPredicted RBP2.11□□□□□ -2.07
CD44-239ENST00000639002 SLMAPQ14BN4 828 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 KARSQ15046 597 aaKnown RBP2.11□□□□□ -2.07
CD44-239ENST00000639002 PKN2Q16513 984 aaKnown RBP2.11□□□□□ -2.07
CD44-239ENST00000639002 PARP6Q2NL67 630 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 CFAP221Q4G0U5 840 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 GPR157Q5UAW9 335 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 NET1Q7Z628 596 aaPredicted RBP2.11□□□□□ -2.07
CD44-239ENST00000639002 LCA5Q86VQ0 697 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 TMEM61Q8N0U2 210 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 ARFGAP2Q8N6H7 521 aa2.11□□□□□ -2.07
CD44-239ENST00000639002 MSANTD4Q8NCY6 345 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms