RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ZCCHC18P0CG32 403 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 CD1EP15812 388 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 GDF1P27539 372 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 PTGDSP41222 190 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 TOMM20Q15388 145 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 TMEM81Q6P7N7 255 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 ZAR1Q86SH2 424 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 OR1J4Q8NGS1 313 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 ZFP90Q8TF47 636 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 CA5BP1Q8WTZ4 195 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 RAB8BQ92930 207 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 NMUR2Q9GZQ4 415 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 PAIP1Q9H074 479 aaKnown RBP16.24■□□□□ 0.19
CLN3-247ENST00000636351 DEFB127Q9H1M4 99 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 ZNF703Q9H7S9 590 aaPredicted RBP16.24■□□□□ 0.19
CLN3-247ENST00000636351 SAR1AQ9NR31 198 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 PPP4R1LQ9P1A2 415 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.24■□□□□ 0.19
CLN3-247ENST00000636351 NDUFAF1Q9Y375 327 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 CAPN7Q9Y6W3 813 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 SCDO00767 359 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 SNPHO15079 494 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 PDE9AO76083 593 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 C1QCP02747 245 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 LCN1P31025 176 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 CRATP43155 626 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 TLE4Q04727 773 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 KLF10Q13118 480 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 MAPRE2Q15555 327 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 FLYWCH1Q4VC44 716 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 CMPK2Q5EBM0 449 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 PAGE3Q5JUK9 113 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 COX20Q5RI15 118 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.23■□□□□ 0.19
CLN3-247ENST00000636351 MEX3BQ6ZN04 569 aaKnown RBP16.23■□□□□ 0.19
CLN3-247ENST00000636351 CDH24Q86UP0 819 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 EID3Q8N140 333 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 ZNF614Q8N883 585 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 OR52N2Q8NGI0 321 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 FAM110BQ8TC76 370 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 ENKD1Q9H0I2 346 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 LDAHQ9H6V9 325 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 EXO5Q9H790 373 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 TPT1P8Q9HAU6 139 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 FBXO34Q9NWN3 711 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 ARMCX1Q9P291 453 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 C15orf41Q9Y2V0 281 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 PCDHB14Q9Y5E9 798 aa16.23■□□□□ 0.19
CLN3-247ENST00000636351 NPIPA5A0A0B4J1W7 369 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 NPIPA7E9PJI5 369 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 CCDC22O60826 627 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 OXSR1O95747 527 aaPredicted RBP16.22■□□□□ 0.19
CLN3-247ENST00000636351 RFPL3SP0C7P2 107 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 NPIPA8P0DM63 369 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 TXNL4AP83876 142 aaKnown RBP16.22■□□□□ 0.19
CLN3-247ENST00000636351 GPAT3Q53EU6 434 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 TIGD3Q6B0B8 471 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 OR5M10Q6IEU7 315 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 DHDDSQ86SQ9 333 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 MARCH3Q86UD3 253 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 CD163Q86VB7 1156 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 GATSQ8NAP1 163 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 ZNF527Q8NB42 609 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 OR4K17Q8NGC6 315 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 GNRHR2Q96P88 292 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 RAD21L1Q9H4I0 556 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 ZDHHC11Q9H8X9 412 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 SLC52A3Q9NQ40 469 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 SDHAF3Q9NRP4 125 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 COQ3Q9NZJ6 369 aa16.22■□□□□ 0.19
CLN3-247ENST00000636351 A0A1B0GTH9 108 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 CLIC1O00299 241 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 HMGN4O00479 90 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 FADS1O60427 444 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 SNX3O60493 162 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 STX11O75558 287 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 TRAPPC6AO75865 159 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 TPOP07202 933 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 CELA3AP09093 270 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 PTPN6P29350 595 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 PTGS2P35354 604 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 NFYCQ13952 458 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 SLC10A1Q14973 349 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 TESK1Q15569 626 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 HYAL4Q2M3T9 481 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 ARHGAP11BQ3KRB8 267 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 MMEL1Q495T6 779 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 ACBD4Q8NC06 268 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 CHDHQ8NE62 594 aaPredicted RBP16.21■□□□□ 0.19
CLN3-247ENST00000636351 OR4C3Q8NH37 302 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 FAM57AQ8TBR7 257 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 TSPEARQ8WU66 669 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 RNF138Q8WVD3 245 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 ROPN1LQ96C74 230 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 DTNBP1Q96EV8 351 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 SDF2Q99470 211 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 MCCC2Q9HCC0 563 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 UBQLN4Q9NRR5 601 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 DKKL1Q9UK85 242 aa16.21■□□□□ 0.19
CLN3-247ENST00000636351 LIPGQ9Y5X9 500 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms