RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SH2D5Q6ZV89 423 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 IKBIPQ70UQ0 350 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 IFT20Q8IY31 132 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 CCDC63Q8NA47 563 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 NUDT8Q8WV74 236 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 CCDC126Q96EE4 140 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 TSSK3Q96PN8 268 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 RHOXF2Q9BQY4 288 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 TXLNGYQ9BZA5 131 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 WBP11Q9Y2W2 641 aaKnown RBP14.47□□□□□ -0.09
CLN3-246ENST00000636228 EMC9Q9Y3B6 208 aa14.47□□□□□ -0.09
CLN3-246ENST00000636228 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.46□□□□□ -0.09
CLN3-246ENST00000636228 TNFSF11O14788 317 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 GLRA3O75311 464 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 KCNK2O95069 426 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 NTN1O95631 604 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 SHBGP04278 402 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 IL11P20809 199 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 RNF144AP50876 292 aaPredicted RBP14.46□□□□□ -0.09
CLN3-246ENST00000636228 MANFP55145 182 aaKnown RBP14.46□□□□□ -0.09
CLN3-246ENST00000636228 CTBP2P56545 445 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 DNAJB13P59910 316 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 SLC18A2Q05940 514 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 FGFBP1Q14512 234 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 CTU2Q2VPK5 515 aaKnown RBP14.46□□□□□ -0.09
CLN3-246ENST00000636228 CCNJQ5T5M9 372 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 MFSD12Q6NUT3 480 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 C20orf204Q6ZNR8 217 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 Q6ZSR9 355 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 PRIMA1Q86XR5 153 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 WFDC8Q8IUA0 241 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 SLC16A11Q8NCK7 471 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 OR6K3Q8NGY3 331 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 OR2T11Q8NH01 316 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 HOXB13Q92826 284 aaPredicted RBP14.46□□□□□ -0.09
CLN3-246ENST00000636228 GIMAP5Q96F15 307 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 ADGRG7Q96K78 797 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 RNF145Q96MT1 663 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 BDH2Q9BUT1 245 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 C12orf49Q9H741 205 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 LRTM1Q9HBL6 345 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 C1orf109Q9NX04 203 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 SH3BP4Q9P0V3 963 aa14.46□□□□□ -0.09
CLN3-246ENST00000636228 A0A0J9YW62 118 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 A0A1W2PRB8 838 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 SMIM23A6NLE4 172 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 FAM171A2A8MVW0 826 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 KIAA1324LA8MWY0 1029 aaPredicted RBP14.45□□□□□ -0.1
CLN3-246ENST00000636228 ALG1L2C9J202 215 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 SLC28A1O00337 649 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 LINC00032P0C843 101 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 FCGR2AP12318 317 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 CPA3P15088 417 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 SDC1P18827 310 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 PTH2RP49190 550 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 OCRLQ01968 901 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 DUSP5Q16690 384 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 RFTN2Q52LD8 501 aaPredicted RBP14.45□□□□□ -0.1
CLN3-246ENST00000636228 CPTPQ5TA50 214 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 PRSS57Q6UWY2 283 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 ZNF704Q6ZNC4 412 aaPredicted RBP14.45□□□□□ -0.1
CLN3-246ENST00000636228 PLEKHM3Q6ZWE6 761 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 WDR75Q8IWA0 830 aaKnown RBP14.45□□□□□ -0.1
CLN3-246ENST00000636228 GTPBP8Q8N3Z3 284 aaPredicted RBP14.45□□□□□ -0.1
CLN3-246ENST00000636228 CDRT4Q8N9R6 151 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 OR2V1Q8NHB1 315 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 POC1BQ8TC44 478 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 FAM110BQ8TC76 370 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 ROBO4Q8WZ75 1007 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 PPCDCQ96CD2 204 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 GMPPAQ96IJ6 420 aaPredicted RBP14.45□□□□□ -0.1
CLN3-246ENST00000636228 TUBB1Q9H4B7 451 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 REEP4Q9H6H4 257 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 MED17Q9NVC6 651 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 OXSMQ9NWU1 459 aa14.45□□□□□ -0.1
CLN3-246ENST00000636228 TTC36A6NLP5 189 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 RGS14O43566 566 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 SS18L1O75177 396 aaPredicted RBP14.44□□□□□ -0.1
CLN3-246ENST00000636228 SYNGR4O95473 234 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 ZNF17P17021 662 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 PSMA4P25789 261 aaKnown RBP14.44□□□□□ -0.1
CLN3-246ENST00000636228 SHC1P29353 583 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 ZNF41P51814 821 aaPredicted RBP14.44□□□□□ -0.1
CLN3-246ENST00000636228 RAC1P63000 192 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 TSC22D1Q15714 1073 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 PLPPR5Q32ZL2 321 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 CCDC153Q494R4 210 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 VPS26BQ4G0F5 336 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 BEX5Q5H9J7 111 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 HBMQ6B0K9 141 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 CEP70Q8NHQ1 597 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 OSTF1Q92882 214 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 PLPPR2Q96GM1 343 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 STOML1Q9UBI4 398 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 MCTS1Q9ULC4 181 aaKnown RBP14.44□□□□□ -0.1
CLN3-246ENST00000636228 ABCA2Q9BZC7 2435 aa14.44□□□□□ -0.1
CLN3-246ENST00000636228 A0A087WZY1 265 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 INAFM1C9JVW0 142 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 NPIPB8E9PQR5 432 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms