RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CNN1P51911 297 aaKnown RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 SSTP61278 116 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 RPS6P62753 249 aaKnown RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 SRYQ05066 204 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 PPP1R8Q12972 351 aaKnown RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 TSTA3Q13630 321 aaPredicted RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 DPYSQ14117 519 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 CARTPTQ16568 116 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 PARP6Q2NL67 630 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF699Q32M78 642 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 SLC39A12Q504Y0 691 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 TEX44Q53QW1 395 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 PRAMEF7Q5VXH5 474 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 PNCKQ6P2M8 343 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 MMAAQ8IVH4 418 aaKnown RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 LEMD2Q8NC56 503 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 OR2AP1Q8NGE2 309 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 PSMG2Q969U7 264 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 NOL4LQ96MY1 436 aaPredicted RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 CBWD1Q9BRT8 395 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF2Q9BSG1 426 aaPredicted RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 NACA2Q9H009 215 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 NANSQ9NR45 359 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 PNO1Q9NRX1 252 aaKnown RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 HOMER3Q9NSC5 361 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 RBM28Q9NW13 759 aaKnown RBP1.31□□□□□ -2.2
SCN1A-208ENST00000625916 MBD2Q9UBB5 411 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 FAM153AQ9UHL3 310 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 TBX21Q9UL17 535 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 FZR1Q9UM11 496 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 NPC1L1Q9UHC9 1359 aa1.31□□□□□ -2.2
SCN1A-208ENST00000625916 A0A096LNJ9 63 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 A0A1W2PRV1 198 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 C19orf81C9J6K1 198 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 H3BMH7 237 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 PPIHO43447 177 aaKnown RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 RAMP1O60894 148 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 HSF2BPO75031 334 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 CABYRO75952 493 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 KLF8O95600 359 aaPredicted RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 OR8U8P0C7N1 319 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 SLC35G4P0C7Q5 338 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 GLULP15104 373 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 GNSP15586 552 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 IGFBP3P17936 291 aaPredicted RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 CCNA2P20248 432 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 VDAC1P21796 283 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 ATP5DP30049 168 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 NTSP30990 170 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 RPL4P36578 427 aaKnown RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 MAGEA4P43358 317 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 DHPSP49366 369 aaPredicted RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 CASP9P55211 416 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 HERVK_113P63132 956 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 ERVK-8P63133 956 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 ACTA1P68133 377 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 MAP2K1Q02750 393 aaPredicted RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 PLOD1Q02809 727 aaPredicted RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 MADCAM1Q13477 382 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 MORF4L2Q15014 288 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 LRRC36Q1X8D7 754 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 LINC00483Q53H64 154 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 SLX4IPQ5VYV7 408 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 OR52W1Q6IF63 320 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 IYDQ6PHW0 289 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 HACD2Q6Y1H2 254 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 P4HA3Q7Z4N8 544 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 GOLGA7Q7Z5G4 137 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 YRDCQ86U90 279 aaKnown RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF410Q86VK4 478 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 AMZ2Q86W34 360 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 ZNF695Q8IW36 515 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 PEX5LQ8IYB4 626 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 PHYHIPQ92561 330 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 HAVCR1Q96D42 359 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 NDUFAF3Q9BU61 184 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 ERVK-6Q9BXR3 956 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 COMMD8Q9NX08 183 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 DUSP12Q9UNI6 340 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 IFT52Q9Y366 437 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 L3MBTL1Q9Y468 752 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 FCGBPQ9Y6R7 5405 aaPredicted RBP1.3□□□□□ -2.2
SCN1A-208ENST00000625916 RAD54L2Q9Y4B4 1467 aa1.3□□□□□ -2.2
SCN1A-208ENST00000625916 IGLV2-18A0A075B6J9 118 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 IGHV7-81A0A0B4J1V7 117 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 SMIM28A0A1B0GU29 152 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 TUBAL3A6NHL2 446 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 TLR4O00206 839 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 AIREO43918 545 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 SCRG1O75711 98 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 CD55P08174 381 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 ADORA2BP29275 332 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 RPL29P47914 159 aaKnown RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 EMDP50402 254 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 CCR6P51684 374 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 KARSQ15046 597 aaKnown RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 UBE2V2Q15819 145 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 ACSF3Q4G176 576 aaPredicted RBP1.29□□□□□ -2.2
SCN1A-208ENST00000625916 CYBRD1Q53TN4 286 aa1.29□□□□□ -2.2
SCN1A-208ENST00000625916 LIPKQ5VXJ0 399 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms