RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 FASTKD3Q14CZ7 662 aaKnown RBP12.23□□□□□ -0.45
SNX1-214ENST00000625244 OR4D1Q15615 310 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 TRADDQ15628 312 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 CDKL4Q5MAI5 379 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 STEAP4Q687X5 459 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 GTF2IRD2BQ6EKJ0 949 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 GRHL2Q6ISB3 625 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 ZNF544Q6NX49 715 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 FAM180BQ6P0A1 224 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 TRMT10BQ6PF06 316 aaKnown RBP12.23□□□□□ -0.45
SNX1-214ENST00000625244 LRRC70Q7Z2Q7 622 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 GTF2IRD2Q86UP8 949 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 NUDT13Q86X67 352 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 TDRPQ86YL5 185 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 IGDCC3Q8IVU1 814 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 WDR75Q8IWA0 830 aaKnown RBP12.23□□□□□ -0.45
SNX1-214ENST00000625244 PDPRQ8NCN5 879 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 NPAS1Q99742 590 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 CD244Q9BZW8 370 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 DERL2Q9GZP9 239 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 ZDHHC18Q9NUE0 388 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 CD274Q9NZQ7 290 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 PCDHB10Q9UN67 800 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 MGAT4BQ9UQ53 548 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 PSAT1Q9Y617 370 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 FKBP7Q9Y680 259 aa12.23□□□□□ -0.45
SNX1-214ENST00000625244 A0A0J9YW62 118 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 FAM95CA0A1B0GW59 222 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 ERAL1O75616 437 aaKnown RBP12.22□□□□□ -0.45
SNX1-214ENST00000625244 DHRS4L1P0CG22 281 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 BMP4P12644 408 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 CD40P25942 277 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 STX2P32856 288 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 CHRNB3Q05901 458 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 CUL3Q13618 768 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 FRG1Q14331 258 aaKnown RBP12.22□□□□□ -0.45
SNX1-214ENST00000625244 ZSWIM7Q19AV6 140 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 TIMM23BQ5SRD1 257 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 C3orf62Q6ZUJ4 267 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 RNF128Q8TEB7 428 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 VSTM2LQ96N03 204 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 INPP5KQ9BT40 448 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 TMEM185BQ9H7F4 350 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 KLHL13Q9P2N7 655 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 STOML1Q9UBI4 398 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 VDAC3Q9Y277 283 aa12.22□□□□□ -0.45
SNX1-214ENST00000625244 GOLGA6L10A6NI86 522 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 APEX1P27695 318 aaKnown RBP12.21□□□□□ -0.45
SNX1-214ENST00000625244 ZNF83P51522 516 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 ARFIP2P53365 341 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 CDH15P55291 814 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 HBMQ6B0K9 141 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 SLC48A1Q6P1K1 146 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 TMEM108Q6UXF1 575 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 Q6ZT83 130 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 TBC1D1Q86TI0 1168 aaPredicted RBP12.21□□□□□ -0.45
SNX1-214ENST00000625244 MARCH3Q86UD3 253 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 ZC3HC1Q86WB0 502 aaKnown RBP12.21□□□□□ -0.45
SNX1-214ENST00000625244 MYLK4Q86YV6 388 aaPredicted RBP12.21□□□□□ -0.45
SNX1-214ENST00000625244 SLC44A2Q8IWA5 706 aaPredicted RBP12.21□□□□□ -0.45
SNX1-214ENST00000625244 ZNF540Q8NDQ6 660 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 OSTF1Q92882 214 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 EXT2Q93063 718 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 TRMOQ9BU70 441 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 SDHAF3Q9NRP4 125 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 PRSS50Q9UI38 385 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 NFU1Q9UMS0 254 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 TSC22D4Q9Y3Q8 395 aa12.21□□□□□ -0.45
SNX1-214ENST00000625244 NPIPA5A0A0B4J1W7 369 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 NPIPA7E9PJI5 369 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 LILRA1O75019 489 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 WISP3O95389 354 aaPredicted RBP12.2□□□□□ -0.46
SNX1-214ENST00000625244 PGM3O95394 542 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 KLK1P06870 262 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 NPIPA8P0DM63 369 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 CD1DP15813 335 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 ZNF17P17021 662 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 GGT1P19440 569 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 CSNK2A2P19784 350 aaPredicted RBP12.2□□□□□ -0.46
SNX1-214ENST00000625244 EDNRAP25101 427 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 PTAFRP25105 342 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 SSTR1P30872 391 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 MRPS22P82650 360 aaKnown RBP12.2□□□□□ -0.46
SNX1-214ENST00000625244 ACAP2Q15057 778 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 ZNF239Q16600 458 aaKnown RBP12.2□□□□□ -0.46
SNX1-214ENST00000625244 SWI5Q1ZZU3 235 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 MST1LQ2TV78 715 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 ESPNLQ6ZVH7 1005 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 USP43Q70EL4 1123 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 CTAGE3PQ8IX95 158 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 ANKS4BQ8N8V4 417 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 EIF1ADQ8N9N8 165 aaKnown RBP12.2□□□□□ -0.46
SNX1-214ENST00000625244 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.2□□□□□ -0.462e-6■■■■■ 29
SNX1-214ENST00000625244 PCDHGA11Q9Y5H2 935 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 PCDHA9Q9Y5H5 950 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 ATP23Q9Y6H3 246 aa12.2□□□□□ -0.46
SNX1-214ENST00000625244 OR5H1A6NKK0 313 aa12.19□□□□□ -0.46
SNX1-214ENST00000625244 K7EPI3 171 aa12.19□□□□□ -0.46
SNX1-214ENST00000625244 NDUFB5O43674 189 aa12.19□□□□□ -0.46
SNX1-214ENST00000625244 PABPC4LP0CB38 370 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms