RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SPACA6W5XKT8 324 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 CPED1A4D0V7 1026 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 CTSVO60911 334 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 PDE9AO76083 593 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 TP53P04637 393 aaPredicted RBP13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 CFIP05156 583 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 CHMP24386 653 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ASAH1Q13510 395 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ESX1Q8N693 406 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ZFP41Q8N8Y5 198 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 C1GALT1C1Q96EU7 318 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 FCRL1Q96LA6 429 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 CHST8Q9H2A9 424 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 FKBP14Q9NWM8 211 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 NUPL2O15504 423 aaKnown RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SSTR2P30874 369 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SDC2P34741 201 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 TAS2R41P59536 307 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 EXOSC7Q15024 291 aaKnown RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF767PQ75MW2 155 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC44A3Q8N4M1 653 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF607Q96SK3 696 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SPATA9Q9BWV2 254 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 GABARAPL3Q9BY60 117 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SIRT3Q9NTG7 399 aaPredicted RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SPTA1P02549 2419 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 KIF26AQ9ULI4 1882 aaPredicted RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 WDFY3Q8IZQ1 3526 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC35F4A4IF30 521 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 HNRNPCL2B2RXH8 293 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 HCRTR1O43613 425 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 H1F0P07305 194 aaKnown RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 DCNP07585 359 aaKnown RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 MYF5P13349 255 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 FUT1P19526 365 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 HNRNPA2B1P22626 353 aaKnown RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 PGDP52209 483 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SNTA1Q13424 505 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ZMYND11Q15326 602 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 P2RY14Q15391 338 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF311Q5JNZ3 666 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ABHD17CQ6PCB6 329 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 CASP12Q6UXS9 341 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 MSANTD1Q6ZTZ1 278 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ASB18Q6ZVZ8 466 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 UBE2Q1Q7Z7E8 422 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 Q8N402 240 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 NUP43Q8NFH3 380 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 MENTQ9BUN1 341 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 PLCXD1Q9NUJ7 323 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 GPR55Q9Y2T6 319 aaPredicted RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 MYL12BO14950 172 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 FABP7O15540 132 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 C1QBP02746 253 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 ALPPP05187 535 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 TRAPPC2P0DI81 140 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 TRAPPC2BP0DI82 140 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 PRKACAP17612 351 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 MYL12AP19105 171 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 CSNK2A2P19784 350 aaPredicted RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 AP2S1P53680 142 aaPredicted RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 REEP5Q00765 189 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 MAB21L1Q13394 359 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SPHARQ15513 63 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 TRMT12Q53H54 448 aaKnown RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 PLAG1Q6DJT9 500 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC51BQ86UW2 128 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 DPCDQ9BVM2 203 aaPredicted RBP13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 EGLN3Q9H6Z9 239 aa13.53□□□□□ -0.24
SHROOM1-208ENST00000617339 C2orf16Q68DN1 1984 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 CASC3O15234 703 aaKnown RBP13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 CSO75390 466 aaKnown RBP13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 NCR1O76036 304 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 TNFP01375 233 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 CHRM4P08173 479 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 CRB2Q5IJ48 1285 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 RTL10Q7L3V2 364 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 FBXO15Q8NCQ5 510 aaPredicted RBP13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 CREB3L4Q8TEY5 395 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 C1QTNF6Q9BXI9 259 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 TTTY10Q9BZA0 68 aa13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 HELZP42694 1942 aaKnown RBP13.52□□□□□ -0.24
SHROOM1-208ENST00000617339 A0A1B0GVC2 190 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 A6NIN4 97 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 SGK494L7N484 410 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 P2RX6O15547 441 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 GPR4P46093 362 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 FGFBP1Q14512 234 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 SNAPC1Q16533 368 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 DEFB133Q30KQ1 61 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 FCRLBQ6BAA4 426 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 PTCRAQ6ISU1 281 aaPredicted RBP13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 ELSPBP1Q96BH3 223 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 UPRTQ96BW1 309 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 PCBD2Q9H0N5 130 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 HDHD2Q9H0R4 259 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 POFUT2Q9Y2G5 429 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 M6PRP20645 277 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms