RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TYW3Q6IPR3 259 aaKnown RBP12.27□□□□□ -0.45
LINC00540-202ENST00000616974 HEPHL1Q6MZM0 1159 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 FRRS1Q6ZNA5 592 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 SLC22A16Q86VW1 577 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 DND1Q8IYX4 353 aaKnown RBP12.27□□□□□ -0.45
LINC00540-202ENST00000616974 ZNF614Q8N883 585 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 FAM83FQ8NEG4 500 aaPredicted RBP12.27□□□□□ -0.45
LINC00540-202ENST00000616974 OR1J4Q8NGS1 313 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 TMCO6Q96DC7 493 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 TMEM41AQ96HV5 264 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 PHF12Q96QT6 1004 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 SECISBP2Q96T21 854 aaKnown RBP12.27□□□□□ -0.45
LINC00540-202ENST00000616974 PNPLA3Q9NST1 481 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 TEX15Q9BXT5 2789 aa12.27□□□□□ -0.45
LINC00540-202ENST00000616974 CACNA1DQ01668 2161 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 ANKHD1Q8IWZ3 2542 aaKnown RBP12.26□□□□□ -0.45
LINC00540-202ENST00000616974 NPIPB9F8W1W9 429 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 CDK2AP1O14519 115 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 H6PDO95479 791 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 ANP32DO95626 131 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 DCTP40126 519 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 STARP49675 285 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 KLF10Q13118 480 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 EFR3AQ14156 821 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.26□□□□□ -0.45
LINC00540-202ENST00000616974 ZCCHC12Q6PEW1 402 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 CD163Q86VB7 1156 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 ATCAYQ86WG3 371 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 MIPOL1Q8TD10 442 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 ITCHQ96J02 903 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 GMPR2Q9P2T1 348 aaKnown RBP12.26□□□□□ -0.45
LINC00540-202ENST00000616974 BOKQ9UMX3 212 aaPredicted RBP12.26□□□□□ -0.45
LINC00540-202ENST00000616974 USP22Q9UPT9 525 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 TRGV8A0A0C4DH27 118 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 A0A1W2PP18 115 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 UGT2B17O75795 530 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 DDX5P17844 614 aaKnown RBP12.26□□□□□ -0.45
LINC00540-202ENST00000616974 CRATP43155 626 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 TOMM34Q15785 309 aaPredicted RBP12.26□□□□□ -0.45
LINC00540-202ENST00000616974 FLYWCH1Q4VC44 716 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 LRIF1Q5T3J3 769 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 SLC30A6Q6NXT4 461 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 TMEM81Q6P7N7 255 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 MTDHQ86UE4 582 aaKnown RBP12.26□□□□□ -0.45
LINC00540-202ENST00000616974 PLCZ1Q86YW0 608 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 MARVELD2Q8N4S9 558 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 MOAP1Q96BY2 351 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 ROPN1LQ96C74 230 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 VDAC3Q9Y277 283 aa12.26□□□□□ -0.45
LINC00540-202ENST00000616974 ZIC3O60481 467 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SNX4O95219 450 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 IGHG3P01860 377 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 TPOP07202 933 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 MTPNP58546 118 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 KCNC4Q03721 635 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 ZNF117Q03924 483 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SLC10A1Q14973 349 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SPATA21Q7Z572 469 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 DOLPP1Q86YN1 238 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 GHDCQ8N2G8 530 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 CHDHQ8NE62 594 aaPredicted RBP12.25□□□□□ -0.45
LINC00540-202ENST00000616974 OR2M3Q8NG83 312 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 STON2Q8WXE9 905 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SIKE1Q9BRV8 207 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 ZNF350Q9GZX5 532 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SLC38A1Q9H2H9 487 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 ZNF835Q9Y2P0 537 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SPG11Q96JI7 2443 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 ALG1L2C9J202 215 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 ACOT7O00154 380 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 FXYD1O00168 92 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 CLIC1O00299 241 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SNX3O60493 162 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 OPN1LWP04000 364 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 IL11P20809 199 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 TBXA2RP21731 343 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SNTA1Q13424 505 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 ARHGAP11BQ3KRB8 267 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 HIST2H2BCQ6DN03 193 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 C16orf62Q7Z3J2 963 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 SNX32Q86XE0 403 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 FADS6Q8N9I5 356 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 TBL1XR1Q9BZK7 514 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 PIF1Q9H611 641 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 LDAHQ9H6V9 325 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 PPP4R1LQ9P1A2 415 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 CARD8Q9Y2G2 431 aa12.25□□□□□ -0.45
LINC00540-202ENST00000616974 ABCA4P78363 2273 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 A0A096LPI6 279 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 TRGV5A0A0B4J1U4 118 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 GMNCA6NCL1 334 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 ZG16O60844 167 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 HPNP05981 417 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 BCHEP06276 602 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 STSP08842 583 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 B3GALT5-AS1P59052 145 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 ELOAQ14241 798 aaKnown RBP12.24□□□□□ -0.45
LINC00540-202ENST00000616974 RGNQ15493 299 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 GPAT3Q53EU6 434 aa12.24□□□□□ -0.45
LINC00540-202ENST00000616974 KLHL26Q53HC5 615 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms