RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PABPC4LP0CB38 370 aaKnown RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 CCL3P10147 92 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 IL7RP16871 459 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 ENDOUP21128 410 aaKnown RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 PRKAR1BP31321 381 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CASP3P42574 277 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CLK3P49761 638 aaKnown RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 GAS1P54826 345 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 DMTNQ08495 405 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 FGFBP1Q14512 234 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 LARS2Q15031 903 aaKnown RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 LIN52Q52LA3 116 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 LRRC23Q53EV4 343 aaPredicted RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 MTX3Q5HYI7 312 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 ZNF311Q5JNZ3 666 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 TBCELQ5QJ74 424 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 FNDC7Q5VTL7 733 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 SPINK14Q6IE38 97 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 SLC30A6Q6NXT4 461 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 DHRS4L2Q6PKH6 230 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 APOOLQ6UXV4 268 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CBLL1Q75N03 491 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 ZNF771Q7L3S4 317 aaPredicted RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 MDGA2Q7Z553 956 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CMIPQ8IY22 773 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 EID3Q8N140 333 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 PSD4Q8NDX1 1056 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 SLC26A7Q8TE54 656 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 WDR60Q8WVS4 1066 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CRELD1Q96HD1 420 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 NSMCE2Q96MF7 247 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 RNF145Q96MT1 663 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CNTNAP3BQ96NU0 1288 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 SIGLEC12Q96PQ1 595 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 PINK1Q9BXM7 581 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 ANGPTL4Q9BY76 406 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CNTNAP3Q9BZ76 1288 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 TBL1XR1Q9BZK7 514 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 HHATLQ9HCP6 504 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 SACM1LQ9NTJ5 587 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 DCAF13Q9NV06 445 aaKnown RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 OLAHQ9NV23 265 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 SEC14L3Q9UDX4 400 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 TUBD1Q9UJT1 453 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 CNOT11Q9UKZ1 510 aaKnown RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 ZNF443Q9Y2A4 671 aaPredicted RBP13.15□□□□□ -0.3
UPF1-211ENST00000600868 ACACBO00763 2458 aa13.15□□□□□ -0.3
UPF1-211ENST00000600868 H3BNH8 94 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 ADAM10O14672 748 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 SLC25A12O75746 678 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 CIB2O75838 187 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 F10P00742 488 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 SERPINA1P01009 418 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 P04436 131 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 CD46P15529 392 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 ATP6V1B2P21281 511 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 PTGDSP41222 190 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 TNFSF10P50591 281 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 EEF1A1P68104 462 aaKnown RBP13.14□□□□□ -0.31
UPF1-211ENST00000600868 KCNJ10P78508 379 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 FLOT2Q14254 428 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 LINC00303Q3SY05 128 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 CYBRD1Q53TN4 286 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 RNF220Q5VTB9 566 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 ZNF836Q6ZNA1 936 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 EIF3MQ7L2H7 374 aaKnown RBP13.14□□□□□ -0.31
UPF1-211ENST00000600868 HMGN2P46Q86SG4 172 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 VRK2Q86Y07 508 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 MISPQ8IVT2 679 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 ZADH2Q8N4Q0 377 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 POP5Q969H6 163 aaKnown RBP13.14□□□□□ -0.31
UPF1-211ENST00000600868 ABHD17AQ96GS6 310 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 RSPO3Q9BXY4 272 aaPredicted RBP13.14□□□□□ -0.31
UPF1-211ENST00000600868 TRIM15Q9C019 465 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 ADNPQ9H2P0 1102 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 ARMC7Q9H6L4 198 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 METTL7AQ9H8H3 244 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 PROK2Q9HC23 129 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 ADPRHL2Q9NX46 363 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 KLRF1Q9NZS2 232 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 RPS6KA6Q9UK32 745 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 SLC35A3Q9Y2D2 325 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 PCDHGB6Q9Y5F9 930 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 LAMA5O15230 3695 aa13.14□□□□□ -0.31
UPF1-211ENST00000600868 LOC400499M0QZD8 3231 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 AQP12BA6NM10 295 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 TMEM229AB2RXF0 380 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SYT5O00445 386 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SUV39H1O43463 412 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 NDUFB5O43674 189 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SNX4O95219 450 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 ANGPTL1O95841 491 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 OPN1SWP03999 348 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 C8BP07358 591 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 CD247P20963 164 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 CNR1P21554 472 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 KCNJ5P48544 419 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SELENOWP63302 87 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 RHDQ02161 417 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms