RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 C15orf41Q9Y2V0 281 aa17.65■□□□□ 0.42
UPF1-209ENST00000600310 HRH3Q9Y5N1 445 aa17.65■□□□□ 0.42
UPF1-209ENST00000600310 EML6Q6ZMW3 1958 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 ZNF462Q96JM2 2506 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 IGLV3-32A0A0A0MS00 114 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 TMEM247A6NEH6 219 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 AIM2O14862 343 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 NDUFB5O43674 189 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 UGT2B17O75795 530 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 WISP2O76076 250 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 EDN3P14138 238 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 MAGEA5P43359 124 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 C17orf67Q0P5P2 114 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 SELPLGQ14242 412 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 GNA13Q14344 377 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 CMPK2Q5EBM0 449 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 MISPQ8IVT2 679 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 OR8J3Q8NGG0 315 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 DUSP19Q8WTR2 217 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 PMM1Q92871 262 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 TRIM8Q9BZR9 551 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 TSPAN10Q9H1Z9 355 aaPredicted RBP17.64■□□□□ 0.41
UPF1-209ENST00000600310 TMEM38AQ9H6F2 299 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 RUBCNLQ9H714 662 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 KAT8Q9H7Z6 458 aaKnown RBP17.64■□□□□ 0.41
UPF1-209ENST00000600310 CALML5Q9NZT1 146 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 PPP4R1LQ9P1A2 415 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 KCNE5Q9UJ90 142 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 DTNAQ9Y4J8 743 aa17.64■□□□□ 0.41
UPF1-209ENST00000600310 SETXQ7Z333 2677 aaKnown RBP17.64■□□□□ 0.41
UPF1-209ENST00000600310 C17orf51A8MQB3 221 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 CBR3O75828 277 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 BCHEP06276 602 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 ARAFP10398 606 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 CRISP3P54108 245 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 FOXK1P85037 733 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 SLC10A1Q14973 349 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 CD226Q15762 336 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 PRAMEF8Q5VWM4 474 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 PRAMEF7Q5VXH5 474 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 OR5M10Q6IEU7 315 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 HACD2Q6Y1H2 254 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 MTERF4Q7Z6M4 381 aaKnown RBP17.63■□□□□ 0.41
UPF1-209ENST00000600310 FITM2Q8N6M3 262 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 METTL25Q8N6Q8 603 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 FADS6Q8N9I5 356 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 MAL2Q969L2 176 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 ZG16BQ96DA0 208 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 TMEM19Q96HH6 336 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 DEFB127Q9H1M4 99 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 MTHFD2LQ9H903 347 aaPredicted RBP17.63■□□□□ 0.41
UPF1-209ENST00000600310 ACKR4Q9NPB9 350 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 SUCOQ9UBS9 1254 aaKnown RBP17.63■□□□□ 0.41
UPF1-209ENST00000600310 SEC14L3Q9UDX4 400 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 NINQ8N4C6 2090 aa17.63■□□□□ 0.41
UPF1-209ENST00000600310 BOD1L1Q8NFC6 3051 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 CENPVL1A0A0U1RR11 272 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 B4DXG7 233 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 H3BNH8 94 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 CBX6O95503 412 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 ENDOUP21128 410 aaKnown RBP17.62■□□□□ 0.41
UPF1-209ENST00000600310 GDF1P27539 372 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 ART3Q13508 389 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 KRT72Q14CN4 511 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 ADRM1Q16186 407 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 IGFBP7Q16270 282 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 MAPK14Q16539 360 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 RABL3Q5HYI8 236 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 PDZK1Q5T2W1 519 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 NET1Q7Z628 596 aaPredicted RBP17.62■□□□□ 0.41
UPF1-209ENST00000600310 SERPINA11Q86U17 422 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 GATSQ8NAP1 163 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 GALNT11Q8NCW6 608 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 ST6GALNAC3Q8NDV1 305 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 OR2M3Q8NG83 312 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 DTNBP1Q96EV8 351 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 TREX2Q9BQ50 279 aaPredicted RBP17.62■□□□□ 0.41
UPF1-209ENST00000600310 GPATCH1Q9BRR8 931 aaKnown RBP17.62■□□□□ 0.41
UPF1-209ENST00000600310 BCL2L10Q9HD36 194 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 PLSCR2Q9NRY7 297 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 ARL8BQ9NVJ2 186 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 TAGLN3Q9UI15 199 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 FBXL2Q9UKC9 423 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 DSPPQ9NZW4 1301 aa17.62■□□□□ 0.41
UPF1-209ENST00000600310 FLNBO75369 2602 aaKnown RBP17.62■□□□□ 0.41
UPF1-209ENST00000600310 C15orf38-AP3S2A0A0A6YYH1 394 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 A0A0G2JPF8 293 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 SERINC4A6NH21 518 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 AGAP5A6NIR3 686 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 HNRNPCL2B2RXH8 293 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 HNRNPCL3B7ZW38 293 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 HNRNPCL1O60812 293 aaKnown RBP17.61■□□□□ 0.41
UPF1-209ENST00000600310 IGHG3P01860 377 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 HPNP05981 417 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 CELA3AP09093 270 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 HNRNPCL4P0DMR1 293 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 RPS4Y1P22090 263 aaKnown RBP17.61■□□□□ 0.41
UPF1-209ENST00000600310 SLC6A2P23975 617 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 ADH7P40394 386 aa17.61■□□□□ 0.41
UPF1-209ENST00000600310 NUDT2P50583 147 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms